Update BICseq2bed.py

ENSEMBL annotation added for chroms
uci-cbcl · May 21, 2014 · bfa86d3 · bfa86d3
1 parent 92be9c1
commit bfa86d3
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/bin/BICseq2bed.py b/bin/BICseq2bed.py
@@ -14,7 +14,9 @@
 
 CHROM_LIST = ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8',
               'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15',
-              'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22']
+              'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22',
+              '1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12',
+              '13', '14', '15', '16', '17', '18', '19', '20', '21', '22']
 
 def main():
     parser = argparse.ArgumentParser(description='Converting BICseq segments file to BED file')
@@ -47,4 +49,4 @@ def main():
     outfile.close()
 
 if __name__ == '__main__':
-    main()
+    main()