Switch from mambaforge to miniforge (#847)

* switch from mambaforge to miniforge

* change mambaforge to miniforge path

CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+**v5.7.0:**
+
+* Switch grading image from Mambaforge to Miniforge due to the [sunestting of Mambaforge](https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/) per [#846](https://github.com/ucbds-infra/otter-grader/issues/846)
+
 **v5.6.0:**
 
 * Updated Otter Grade to write grading summary for each notebook per [#814](https://github.com/ucbds-infra/otter-grader/issues/814)

docs/_static/python_setup.sh

@@ -13,9 +13,9 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O /autograder/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O /autograder/source/mamba_install.sh ; \
 fi
 chmod +x /autograder/source/mamba_install.sh

docs/_static/r_setup.sh

@@ -18,9 +18,9 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O /autograder/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O /autograder/source/mamba_install.sh ; \
 fi
 chmod +x /autograder/source/mamba_install.sh

otter/generate/templates/common/run_autograder

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
-export PATH="/root/mambaforge/bin:$PATH"
-source /root/mambaforge/etc/profile.d/conda.sh
-source /root/mambaforge/etc/profile.d/mamba.sh
+export PATH="/root/miniforge3/bin:$PATH"
+source /root/miniforge3/etc/profile.d/conda.sh
+source /root/miniforge3/etc/profile.d/mamba.sh
 mamba activate {{ otter_env_name }}
 python {{ autograder_dir }}/source/run_otter.py

otter/generate/templates/python/setup.sh

@@ -13,16 +13,16 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O {{ autograder_dir }}/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O {{ autograder_dir }}/source/mamba_install.sh ; \
 fi
 chmod +x {{ autograder_dir }}/source/mamba_install.sh
 {{ autograder_dir }}/source/mamba_install.sh -b
-echo "export PATH=/root/mambaforge/bin:\$PATH" >> /root/.bashrc
+echo "export PATH=/root/miniforge3/bin:\$PATH" >> /root/.bashrc
 
-export PATH=/root/mambaforge/bin:$PATH
+export PATH=/root/miniforge3/bin:$PATH
 export TAR="/bin/tar"
 
 # install dependencies with mamba

otter/generate/templates/r/setup.sh

@@ -18,16 +18,16 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O {{ autograder_dir }}/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O {{ autograder_dir }}/source/mamba_install.sh ; \
 fi
 chmod +x {{ autograder_dir }}/source/mamba_install.sh
 {{ autograder_dir }}/source/mamba_install.sh -b
-echo "export PATH=/root/mambaforge/bin:\$PATH" >> /root/.bashrc
+echo "export PATH=/root/miniforge3/bin:\$PATH" >> /root/.bashrc
 
-export PATH=/root/mambaforge/bin:$PATH
+export PATH=/root/miniforge3/bin:$PATH
 export TAR="/bin/tar"
 
 # install dependencies with mamba{% if channel_priority_strict %}

otter/grade/Dockerfile

@@ -25,3 +25,8 @@ RUN dos2unix /autograder/run_autograder /autograder/source/setup.sh && \
 ADD otter_config.json run_otter.py /autograder/source/
 ADD files* /autograder/source/files/
 ADD tests /autograder/source/tests/
+
+ENV PATH=/root/miniforge3/bin:$PATH
+ADD __otter-grader /tmp/otter-grader
+RUN mamba run -n otter-env pip install /tmp/otter-grader
+RUN rm -rf /tmp/*

otter/run/run_autograder/autograder_config.py

@@ -14,8 +14,8 @@ class AutograderConfig(fica.Config):
     )
 
     points_possible = fica.Key(
-        description="a custom total score for the assignment; if unspecified the sum of question " \
-            "point values is used.",
+        description="a custom total score for the assignment; if unspecified the sum of question "
+        "point values is used.",
         default=None,
     )
 
@@ -45,20 +45,20 @@ class AutograderConfig(fica.Config):
     )
 
     grade_from_log = fica.Key(
-        description="whether to re-assemble the student's environment from the log rather than " \
-            "by re-executing their submission",
+        description="whether to re-assemble the student's environment from the log rather than "
+        "by re-executing their submission",
         default=False,
     )
 
     serialized_variables = fica.Key(
-        description="a mapping of variable names to type strings for validating a deserialized " \
-            "student environment",
+        description="a mapping of variable names to type strings for validating a deserialized "
+        "student environment",
         default=None,
     )
 
     pdf = fica.Key(
-        description="whether to generate a PDF of the notebook when not using Gradescope " \
-            "auto-upload",
+        description="whether to generate a PDF of the notebook when not using Gradescope "
+        "auto-upload",
         default=False,
     )
 
@@ -105,7 +105,7 @@ class AutograderConfig(fica.Config):
 
     miniconda_path = fica.Key(
         description="the path to the mamba install directory",
-        default="/root/mambaforge",
+        default="/root/miniforge3",
     )
 
     plugins = fica.Key(
@@ -134,39 +134,39 @@ class AutograderConfig(fica.Config):
     )
 
     log_level = fica.Key(
-        description="a log level for logging messages; any value suitable for " \
-            "``logging.Logger.setLevel``",
+        description="a log level for logging messages; any value suitable for "
+        "``logging.Logger.setLevel``",
         default=None,
     )
 
     assignment_name = fica.Key(
-        description="a name for the assignment to ensure that students submit to the correct " \
-            "autograder",
+        description="a name for the assignment to ensure that students submit to the correct "
+        "autograder",
         default=None,
     )
 
     warn_missing_pdf = fica.Key(
-        description="whether to add a 0-point public test to the Gradescope output to indicate " \
-            "to students whether a PDF was found/generated for this assignment",
+        description="whether to add a 0-point public test to the Gradescope output to indicate "
+        "to students whether a PDF was found/generated for this assignment",
         default=False,
     )
 
     force_public_test_summary = fica.Key(
-        description="whether to show a summary of public test case results when show_hidden is " \
-            "true",
+        description="whether to show a summary of public test case results when show_hidden is "
+        "true",
         default=True,
     )
 
     submit_blank_pdf_on_export_failure = fica.Key(
-        description="whether to submit a blank PDF to the manual-grading Gradescope assignment " \
-            "if a PDF cannot be generated from the submission",
+        description="whether to submit a blank PDF to the manual-grading Gradescope assignment "
+        "if a PDF cannot be generated from the submission",
         default=False,
     )
 
     use_submission_pdf = fica.Key(
-        description="use the PDF in the submission zip file instead of exporting a new one; if " \
-            "no PDF is present, a new one is generated anyway; assumes there is only 1 PDF file " \
-            "in the submission",
+        description="use the PDF in the submission zip file instead of exporting a new one; if "
+        "no PDF is present, a new one is generated anyway; assumes there is only 1 PDF file "
+        "in the submission",
         default=False,
     )
 

test/files/partial-dockerfile.txt

@@ -1,4 +1,4 @@
-ENV PATH=/root/mambaforge/bin:$PATH
+ENV PATH=/root/miniforge3/bin:$PATH
 ADD __otter-grader /tmp/otter-grader
 RUN mamba run -n otter-env pip install /tmp/otter-grader
 RUN rm -rf /tmp/*

test/test_assign/files/example-autograder-correct/run_autograder

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
-export PATH="/root/mambaforge/bin:$PATH"
-source /root/mambaforge/etc/profile.d/conda.sh
-source /root/mambaforge/etc/profile.d/mamba.sh
+export PATH="/root/miniforge3/bin:$PATH"
+source /root/miniforge3/etc/profile.d/conda.sh
+source /root/miniforge3/etc/profile.d/mamba.sh
 mamba activate otter-env
 python /autograder/source/run_otter.py

test/test_assign/files/example-autograder-correct/setup.sh

@@ -13,16 +13,16 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O /autograder/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O /autograder/source/mamba_install.sh ; \
 fi
 chmod +x /autograder/source/mamba_install.sh
 /autograder/source/mamba_install.sh -b
-echo "export PATH=/root/mambaforge/bin:\$PATH" >> /root/.bashrc
+echo "export PATH=/root/miniforge3/bin:\$PATH" >> /root/.bashrc
 
-export PATH=/root/mambaforge/bin:$PATH
+export PATH=/root/miniforge3/bin:$PATH
 export TAR="/bin/tar"
 
 # install dependencies with mamba

test/test_assign/files/gs-autograder-correct/run_autograder

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
-export PATH="/root/mambaforge/bin:$PATH"
-source /root/mambaforge/etc/profile.d/conda.sh
-source /root/mambaforge/etc/profile.d/mamba.sh
+export PATH="/root/miniforge3/bin:$PATH"
+source /root/miniforge3/etc/profile.d/conda.sh
+source /root/miniforge3/etc/profile.d/mamba.sh
 mamba activate otter-env
 python /autograder/source/run_otter.py

test/test_assign/files/gs-autograder-correct/setup.sh

@@ -13,16 +13,16 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O /autograder/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O /autograder/source/mamba_install.sh ; \
 fi
 chmod +x /autograder/source/mamba_install.sh
 /autograder/source/mamba_install.sh -b
-echo "export PATH=/root/mambaforge/bin:\$PATH" >> /root/.bashrc
+echo "export PATH=/root/miniforge3/bin:\$PATH" >> /root/.bashrc
 
-export PATH=/root/mambaforge/bin:$PATH
+export PATH=/root/miniforge3/bin:$PATH
 export TAR="/bin/tar"
 
 # install dependencies with mamba

test/test_assign/files/rmd-autograder-correct/run_autograder

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
-export PATH="/root/mambaforge/bin:$PATH"
-source /root/mambaforge/etc/profile.d/conda.sh
-source /root/mambaforge/etc/profile.d/mamba.sh
+export PATH="/root/miniforge3/bin:$PATH"
+source /root/miniforge3/etc/profile.d/conda.sh
+source /root/miniforge3/etc/profile.d/mamba.sh
 mamba activate otter-env
 python /autograder/source/run_otter.py

test/test_assign/files/rmd-autograder-correct/setup.sh

@@ -18,16 +18,16 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O /autograder/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O /autograder/source/mamba_install.sh ; \
 fi
 chmod +x /autograder/source/mamba_install.sh
 /autograder/source/mamba_install.sh -b
-echo "export PATH=/root/mambaforge/bin:\$PATH" >> /root/.bashrc
+echo "export PATH=/root/miniforge3/bin:\$PATH" >> /root/.bashrc
 
-export PATH=/root/mambaforge/bin:$PATH
+export PATH=/root/miniforge3/bin:$PATH
 export TAR="/bin/tar"
 
 # install dependencies with mamba

test/test_generate/files/autograder-correct/run_autograder

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
-export PATH="/root/mambaforge/bin:$PATH"
-source /root/mambaforge/etc/profile.d/conda.sh
-source /root/mambaforge/etc/profile.d/mamba.sh
+export PATH="/root/miniforge3/bin:$PATH"
+source /root/miniforge3/etc/profile.d/conda.sh
+source /root/miniforge3/etc/profile.d/mamba.sh
 mamba activate otter-env
 python /autograder/source/run_otter.py

test/test_generate/files/autograder-correct/setup.sh

@@ -13,16 +13,16 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O /autograder/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O /autograder/source/mamba_install.sh ; \
 fi
 chmod +x /autograder/source/mamba_install.sh
 /autograder/source/mamba_install.sh -b
-echo "export PATH=/root/mambaforge/bin:\$PATH" >> /root/.bashrc
+echo "export PATH=/root/miniforge3/bin:\$PATH" >> /root/.bashrc
 
-export PATH=/root/mambaforge/bin:$PATH
+export PATH=/root/miniforge3/bin:$PATH
 export TAR="/bin/tar"
 
 # install dependencies with mamba

test/test_generate/files/autograder-custom-env/run_autograder

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
-export PATH="/root/mambaforge/bin:$PATH"
-source /root/mambaforge/etc/profile.d/conda.sh
-source /root/mambaforge/etc/profile.d/mamba.sh
+export PATH="/root/miniforge3/bin:$PATH"
+source /root/miniforge3/etc/profile.d/conda.sh
+source /root/miniforge3/etc/profile.d/mamba.sh
 mamba activate otter-env
 python /autograder/source/run_otter.py

test/test_generate/files/autograder-custom-env/setup.sh

@@ -13,16 +13,16 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O /autograder/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O /autograder/source/mamba_install.sh ; \
 fi
 chmod +x /autograder/source/mamba_install.sh
 /autograder/source/mamba_install.sh -b
-echo "export PATH=/root/mambaforge/bin:\$PATH" >> /root/.bashrc
+echo "export PATH=/root/miniforge3/bin:\$PATH" >> /root/.bashrc
 
-export PATH=/root/mambaforge/bin:$PATH
+export PATH=/root/miniforge3/bin:$PATH
 export TAR="/bin/tar"
 
 # install dependencies with mamba

test/test_generate/files/autograder-r-correct/run_autograder

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
-export PATH="/root/mambaforge/bin:$PATH"
-source /root/mambaforge/etc/profile.d/conda.sh
-source /root/mambaforge/etc/profile.d/mamba.sh
+export PATH="/root/miniforge3/bin:$PATH"
+source /root/miniforge3/etc/profile.d/conda.sh
+source /root/miniforge3/etc/profile.d/mamba.sh
 mamba activate otter-env
 python /autograder/source/run_otter.py

test/test_generate/files/autograder-r-correct/setup.sh

@@ -18,16 +18,16 @@ dpkg -i /tmp/pandoc.deb
 
 # install mamba
 if [ $(uname -p) = "arm" ] || [ $(uname -p) = "aarch64" ] ; \
-    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-aarch64.sh \
+    then wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh \
         -O /autograder/source/mamba_install.sh ; \
-    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh \
+    else wget -nv https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh \
         -O /autograder/source/mamba_install.sh ; \
 fi
 chmod +x /autograder/source/mamba_install.sh
 /autograder/source/mamba_install.sh -b
-echo "export PATH=/root/mambaforge/bin:\$PATH" >> /root/.bashrc
+echo "export PATH=/root/miniforge3/bin:\$PATH" >> /root/.bashrc
 
-export PATH=/root/mambaforge/bin:$PATH
+export PATH=/root/miniforge3/bin:$PATH
 export TAR="/bin/tar"
 
 # install dependencies with mamba

test/test_generate/files/autograder-r-requirements-correct/run_autograder

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
-export PATH="/root/mambaforge/bin:$PATH"
-source /root/mambaforge/etc/profile.d/conda.sh
-source /root/mambaforge/etc/profile.d/mamba.sh
+export PATH="/root/miniforge3/bin:$PATH"
+source /root/miniforge3/etc/profile.d/conda.sh
+source /root/miniforge3/etc/profile.d/mamba.sh
 mamba activate otter-env
 python /autograder/source/run_otter.py