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GenoTyphi v1.6.0
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@zadyson zadyson released this 06 Dec 16:26
v1.6.0
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This release of GenoTyphi includes the original S. Typhi genotyping scheme defined in Wong et al. 2016, and subsequent updates for:

  • 4.3.1.1 (H58 lineage I)
  • 4.3.1.2 (H58 lineage II)
  • 4.3.1.3 (H58 lineage III)
  • 4.3.1.1.P1 (XDR outbreak clade)
  • 3.3.2 and sublineages 3.3.2.Bd1, 3.3.2.Bd2
  • 2.5.2
  • QRDR mutation calling
  • acrB R717 mutation calling
Assets 2
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