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update DOI for Mykrobe panel
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katholt authored Dec 13, 2022
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Expand Up @@ -65,7 +65,7 @@ Output is a single tab-delimited table, output format is [described below](#expl

First, install Mykrobe (v0.10.0+) as per the instructions on the [Mykrobe github](https://github.com/Mykrobe-tools/mykrobe).

Once Mykrobe is installed, you can run the following two commands to ensure you have the most up-to-date panels for genotyping, including the [Typhi panel](https://doi.org/10.26180/14881701.v1):
Once Mykrobe is installed, you can run the following two commands to ensure you have the most up-to-date panels for genotyping, including the [Typhi panel](https://doi.org/10.6084/m9.figshare.21695528.v1):
```
mykrobe panels update_metadata
mykrobe panels update_species all
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