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Merge pull request #75 from statonlab/new_factories
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new factories
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@bradfordcondon
bradfordcondon authored Aug 6, 2018
2 parents 1e616e4 + e9e1969 commit e469f7f
Showing 1 changed file with 143 additions and 37 deletions.
180 changes: 143 additions & 37 deletions stubs/DataFactory.php
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Original file line number Diff line number Diff line change
Expand Up @@ -13,61 +13,167 @@

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.cv', function (Faker\Generator $faker) {
return [
'name' => $faker->name,
'definition' => $faker->text,
];
return [
'name' => $faker->unique()->word . uniqid(),
// 'name' => $faker->unique($reset = TRUE)->word ,
'definition' => $faker->text,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.db', function (Faker\Generator $faker) {
return [
'name' => $faker->name,
'description' => $faker->text,
'urlprefix' => $faker->url,
'url' => $faker->url,
];
return [
'name' => $faker->unique()->word . uniqid(),
'description' => $faker->text,
'urlprefix' => $faker->url,
'url' => $faker->url,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.dbxref', function (Faker\Generator $faker) {
return [
'db_id' => factory('chado.db')->create()->db_id,
'accession' => $faker->numberBetween(),
'version' => $faker->numberBetween(),
'description' => $faker->text,
];
return [
'db_id' => factory('chado.db')->create()->db_id,
'accession' => $faker->numberBetween(),
'version' => $faker->numberBetween(),
'description' => $faker->text,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.cvterm', function (Faker\Generator $faker) {
return [
'cv_id' => factory('chado.cv')->create()->cv_id,
'dbxref_id' => factory('chado.dbxref')->create()->dbxref_id,
'name' => $faker->name,
'definition' => $faker->text,
'is_obsolete' => 0,
'is_relationshiptype' => 0,
];
return [
'cv_id' => factory('chado.cv')->create()->cv_id,
'dbxref_id' => factory('chado.dbxref')->create()->dbxref_id,
'name' => $faker->word,
'definition' => $faker->text,
'is_obsolete' => 0,
'is_relationshiptype' => 0,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.organism', function (Faker\Generator $faker) {
return [
'abbreviation' => $faker->name,
'genus' => $faker->name,
'species' => $faker->name,
'common_name' => $faker->name,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
];

$genus = $faker->word;
$species = $faker->word;

$abbr = substr($genus, 0) + ". " + $species;

return [
'abbreviation' => $abbr,
'genus' => $genus,
'species' => $faker->name,
'common_name' => $faker->word,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.feature', function (Faker\Generator $faker) {
return [
'name' => $faker->name,
'uniquename' => $faker->unique()->name,
'organism_id' => factory('chado.organism')->create()->organism_id,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
];
return [
'name' => $faker->word,
'uniquename' => $faker->unique()->word,
'organism_id' => factory('chado.organism')->create()->organism_id,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
];
});


Factory::define('chado.analysis', function (Faker\Generator $faker) {
return [
'name' => $faker->word,
'description' => $faker->text,
'program' => $faker->unique()->word,
'programversion' => $faker->unique()->word,
'sourcename' => $faker->unique()->word,
'algorithm' => $faker->word,
'sourcename' => $faker->word,
'sourceversion' => $faker->word,
'sourceuri' => $faker->word,
// 'timeexecuted' => $faker->time()// needs to match 2018-03-23 15:08:00.000000
];
});

Factory::define('chado.contact', function (Faker\Generator $faker) {
return [
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
'name' => $faker->name,
'description' => $faker->text,
];
});


Factory::define('chado.biomaterial', function (Faker\Generator $faker) {
return [

'taxon_id' => factory('chado.organism')->create()->organism_id,
'biosourceprovider_id' => factory('chado.contact')->create()->contact_id,
'dbxref_id' => factory('chado.dbxref')->create()->dbxref_id,
'name' => $faker->unique()->word,
'description' => $faker->text,

];
});


Factory::define('chado.featuremap', function (Faker\Generator $faker) {
return [

'name' => $faker->unique()->word,
'description' => $faker->text,
'unittype_id' => factory('chado.cvterm')->create()->cvterm_id,
];
});

Factory::define('chado.featurepos', function (Faker\Generator $faker) {
return [
'featuremap_id' => factory('chado.featuremap')->create()->featuremap_id,
'feature_id' => factory('chado.feature')->create()->feature_id,
'map_feature_id' => factory('chado.feature')->create()->feature_id,
'mappos' => $faker->randomFloat,
];
});

//Coming soon.
//TODO: requires db search_path configuration.

//Factory::define('chado.featureloc', function (Faker\Generator $faker) {
//
// $a = $faker->randomNumber;
// $b = $faker->randomNumber;
//
// return [
//
// 'feature_id' => factory('chado.feature')->create()->feature_id,
// 'srcfeature_id' => factory('chado.feature')->create()->feature_id,
// 'fmin' => min([$a, $b]),
// 'is_fmin_partial' => 0,
// 'fmax' => max([$a, $b]),
// 'is_fmax_partial' => 0,
// 'strand' => NULL,
// 'phase' => NULL,
// 'residue_info' => $faker->word,
// 'locgroup' => 0,
// 'rank' => 0,
// ];
//
//});

Factory::define('chado.library', function (Faker\Generator $faker) {
return [
'organism_id' => factory('chado.organism')->create()->organism_id,
'name' => $faker->word,
'uniquename' => $faker->unique()->word,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
'is_obsolete' => 0,
];
});

Factory::define('chado.project', function (Faker\Generator $faker) {
return [

'name' => $faker->word,
'description' => $faker->text,
];
});

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