Skip to content

Commit

Permalink
Merge pull request #142 from tripal/data-factory
Browse files Browse the repository at this point in the history 
A few fixes to the data factoey file
  • Loading branch information
@almasaeed2010
almasaeed2010 authored Mar 19, 2019
2 parents 3a13f64 + e24fbdb commit c3fc5e6
Showing 1 changed file with 133 additions and 127 deletions.
260 changes: 133 additions & 127 deletions stubs/DataFactory.php
View file
Original file line number Diff line number Diff line change
Expand Up @@ -13,178 +13,184 @@

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.cv', function (Faker\Generator $faker) {
return [
'name' => $faker->unique()->word . uniqid(),
// 'name' => $faker->unique($reset = TRUE)->word ,
'definition' => $faker->text,
];
return [
'name' => $faker->unique()->word . uniqid(),
// 'name' => $faker->unique($reset = TRUE)->word ,
'definition' => $faker->text,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.db', function (Faker\Generator $faker) {
return [
'name' => $faker->unique()->word . uniqid(),
'description' => $faker->text,
'urlprefix' => $faker->url,
'url' => $faker->url,
];
return [
'name' => $faker->unique()->word . uniqid(),
'description' => $faker->text,
'urlprefix' => $faker->url,
'url' => $faker->url,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.dbxref', function (Faker\Generator $faker) {
return [
'db_id' => factory('chado.db')->create()->db_id,
'accession' => $faker->numberBetween(),
'version' => $faker->numberBetween(),
'description' => $faker->text,
];
return [
'db_id' => factory('chado.db')->create()->db_id,
'accession' => $faker->numberBetween(),
'version' => $faker->numberBetween(),
'description' => $faker->text,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.cvterm', function (Faker\Generator $faker) {
return [
'cv_id' => factory('chado.cv')->create()->cv_id,
'dbxref_id' => factory('chado.dbxref')->create()->dbxref_id,
'name' => $faker->word,
'definition' => $faker->text,
'is_obsolete' => 0,
'is_relationshiptype' => 0,
];
return [
'cv_id' => factory('chado.cv')->create()->cv_id,
'dbxref_id' => factory('chado.dbxref')->create()->dbxref_id,
'name' => $faker->word,
'definition' => $faker->text,
'is_obsolete' => 0,
'is_relationshiptype' => 0,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.organism', function (Faker\Generator $faker) {

$genus = $faker->word;
$species = $faker->word;

$abbr = substr($genus, 0) + ". " + $species;

return [
'abbreviation' => $abbr,
'genus' => $genus,
'species' => $faker->name,
'common_name' => $faker->word,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
];
$genus = $faker->word;
$species = $faker->word;
$abbr = substr($genus, 0, 1) . ". " . $species;

return [
'abbreviation' => $abbr,
'genus' => $genus,
'species' => $faker->name,
'common_name' => $faker->word,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.feature', function (Faker\Generator $faker) {
return [
'name' => $faker->word,
'uniquename' => $faker->unique()->word,
'organism_id' => factory('chado.organism')->create()->organism_id,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
];
return [
'name' => $faker->word,
'uniquename' => $faker->unique()->word,
'organism_id' => factory('chado.organism')->create()->organism_id,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
];
});


/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.analysis', function (Faker\Generator $faker) {
return [
'name' => $faker->word,
'description' => $faker->text,
'program' => $faker->unique()->word,
'programversion' => $faker->unique()->word,
'sourcename' => $faker->unique()->word,
'algorithm' => $faker->word,
'sourcename' => $faker->word,
'sourceversion' => $faker->word,
'sourceuri' => $faker->word,
// 'timeexecuted' => $faker->time()// needs to match 2018-03-23 15:08:00.000000
];
return [
'name' => $faker->word,
'description' => $faker->text,
'program' => $faker->unique()->word,
'programversion' => $faker->unique()->word,
'sourcename' => $faker->unique()->word,
'algorithm' => $faker->word,
'sourcename' => $faker->word,
'sourceversion' => $faker->word,
'sourceuri' => $faker->word,
// 'timeexecuted' => $faker->time()// needs to match 2018-03-23 15:08:00.000000
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.contact', function (Faker\Generator $faker) {
return [
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
'name' => $faker->name,
'description' => $faker->text,
];
return [
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
'name' => $faker->name,
'description' => $faker->text,
];
});


/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.biomaterial', function (Faker\Generator $faker) {
return [
return [

'taxon_id' => factory('chado.organism')->create()->organism_id,
'biosourceprovider_id' => factory('chado.contact')->create()->contact_id,
'dbxref_id' => factory('chado.dbxref')->create()->dbxref_id,
'name' => $faker->unique()->word,
'description' => $faker->text,
'taxon_id' => factory('chado.organism')->create()->organism_id,
'biosourceprovider_id' => factory('chado.contact')->create()->contact_id,
'dbxref_id' => factory('chado.dbxref')->create()->dbxref_id,
'name' => $faker->unique()->word,
'description' => $faker->text,

];
];
});


/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.featuremap', function (Faker\Generator $faker) {
return [

'name' => $faker->unique()->word,
'description' => $faker->text,
'unittype_id' => factory('chado.cvterm')->create()->cvterm_id,
];
return [
'name' => $faker->unique()->word,
'description' => $faker->text,
'unittype_id' => factory('chado.cvterm')->create()->cvterm_id,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.featurepos', function (Faker\Generator $faker) {
return [
'featuremap_id' => factory('chado.featuremap')->create()->featuremap_id,
'feature_id' => factory('chado.feature')->create()->feature_id,
'map_feature_id' => factory('chado.feature')->create()->feature_id,
'mappos' => $faker->randomFloat,
];
return [
'featuremap_id' => factory('chado.featuremap')->create()->featuremap_id,
'feature_id' => factory('chado.feature')->create()->feature_id,
'map_feature_id' => factory('chado.feature')->create()->feature_id,
'mappos' => $faker->randomFloat,
];
});


// IMPORTANT!!!!
// IF you use this factory, call
//
// $prev_db = chado_set_active('chado');
//
// beforehand, and
//
// chado_set_active($prev_db);
//
// afterwards.


/**
* IMPORTANT!!!!
* ==============================================================
* IF you use this factory, call
*
* $prev_db = chado_set_active('chado');
*
* beforehand, and
*
* chado_set_active($prev_db);
*
* afterwards.
*
* @see StatonLab\TripalTestSuite\Database\Factory::define()
*/
Factory::define('chado.featureloc', function (Faker\Generator $faker) {


$a = $faker->randomNumber;
$b = $faker->randomNumber;

return [

'feature_id' => factory('chado.feature')->create()->feature_id,
'srcfeature_id' => factory('chado.feature')->create()->feature_id,
'fmin' => min([$a, $b]),
'is_fmin_partial' => 0,
'fmax' => max([$a, $b]),
'is_fmax_partial' => 0,
'strand' => NULL,
'phase' => NULL,
'residue_info' => $faker->word,
'locgroup' => 0,
'rank' => 0,
];

$a = $faker->randomNumber;
$b = $faker->randomNumber;

return [
'feature_id' => factory('chado.feature')->create()->feature_id,
'srcfeature_id' => factory('chado.feature')->create()->feature_id,
'fmin' => min([$a, $b]),
'is_fmin_partial' => 0,
'fmax' => max([$a, $b]),
'is_fmax_partial' => 0,
'strand' => NULL,
'phase' => NULL,
'residue_info' => $faker->word,
'locgroup' => 0,
'rank' => 0,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.library', function (Faker\Generator $faker) {
return [
'organism_id' => factory('chado.organism')->create()->organism_id,
'name' => $faker->word,
'uniquename' => $faker->unique()->word,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
'is_obsolete' => 0,
];
return [
'organism_id' => factory('chado.organism')->create()->organism_id,
'name' => $faker->word,
'uniquename' => $faker->unique()->word,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
'is_obsolete' => 0,
];
});

/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.project', function (Faker\Generator $faker) {
return [
return [
'name' => $faker->word,
'description' => $faker->text,
];
});

'name' => $faker->word,
'description' => $faker->text,
];
/** @see StatonLab\TripalTestSuite\Database\Factory::define() */
Factory::define('chado.pub', function (Faker\Generator $faker) {
return [
'uniquename' => $faker->word,
'type_id' => factory('chado.cvterm')->create()->cvterm_id,
];
});

0 comments on commit c3fc5e6

Please sign in to comment.