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Support reading deletion vectors in Delta Lake #17477

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Sep 12, 2023
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Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,7 @@ public class DeltaLakeColumnHandle
{
private static final int INSTANCE_SIZE = instanceSize(DeltaLakeColumnHandle.class);

public static final String ROW_POSITION_COLUMN_NAME = "$row_position";
public static final String ROW_ID_COLUMN_NAME = "$row_id";

public static final Type MERGE_ROW_ID_TYPE = rowType(
Expand Down Expand Up @@ -218,6 +219,11 @@ public HiveColumnHandle toHiveColumnHandle()
Optional.empty());
}

public static DeltaLakeColumnHandle rowPositionColumnHandle()
{
return new DeltaLakeColumnHandle(ROW_POSITION_COLUMN_NAME, BIGINT, OptionalInt.empty(), ROW_POSITION_COLUMN_NAME, BIGINT, SYNTHESIZED, Optional.empty());
}

public static DeltaLakeColumnHandle pathColumnHandle()
{
return new DeltaLakeColumnHandle(PATH_COLUMN_NAME, PATH_TYPE, OptionalInt.empty(), PATH_COLUMN_NAME, PATH_TYPE, SYNTHESIZED, Optional.empty());
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -1654,7 +1654,8 @@ private static void appendAddFileEntries(TransactionLogWriter transactionLogWrit
dataChange,
Optional.of(serializeStatsAsJson(statisticsWithExactNames)),
Optional.empty(),
ImmutableMap.of()));
ImmutableMap.of(),
Optional.empty()));
}
}

Expand Down Expand Up @@ -3084,7 +3085,8 @@ private AddFileEntry prepareUpdatedAddFileEntry(ComputedStatistics stats, AddFil
false,
Optional.of(serializeStatsAsJson(deltaLakeJsonFileStatistics)),
Optional.empty(),
addFileEntry.getTags());
addFileEntry.getTags(),
addFileEntry.getDeletionVector());
}
catch (JsonProcessingException e) {
throw new TrinoException(GENERIC_INTERNAL_ERROR, "Statistics serialization error", e);
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@

import io.airlift.json.JsonCodec;
import io.airlift.json.JsonCodecFactory;
import io.trino.plugin.deltalake.delete.PageFilter;
import io.trino.plugin.hive.ReaderProjectionsAdapter;
import io.trino.spi.Page;
import io.trino.spi.TrinoException;
Expand All @@ -33,6 +34,7 @@
import java.util.Optional;
import java.util.OptionalLong;
import java.util.Set;
import java.util.function.Supplier;

import static com.google.common.base.Throwables.throwIfInstanceOf;
import static io.airlift.slice.Slices.utf8Slice;
Expand Down Expand Up @@ -63,6 +65,7 @@ public class DeltaLakePageSource
private final Block partitionsBlock;
private final ConnectorPageSource delegate;
private final Optional<ReaderProjectionsAdapter> projectionsAdapter;
private final Supplier<Optional<PageFilter>> deletePredicate;

public DeltaLakePageSource(
List<DeltaLakeColumnHandle> columns,
Expand All @@ -73,7 +76,8 @@ public DeltaLakePageSource(
Optional<ReaderProjectionsAdapter> projectionsAdapter,
String path,
long fileSize,
long fileModifiedTime)
long fileModifiedTime,
Supplier<Optional<PageFilter>> deletePredicate)
{
int size = columns.size();
requireNonNull(partitionKeys, "partitionKeys is null");
Expand Down Expand Up @@ -131,6 +135,7 @@ else if (missingColumnNames.contains(column.getBaseColumnName())) {
this.rowIdIndex = rowIdIndex;
this.pathBlock = pathBlock;
this.partitionsBlock = partitionsBlock;
this.deletePredicate = requireNonNull(deletePredicate, "deletePredicate is null");
}

@Override
Expand Down Expand Up @@ -168,6 +173,11 @@ public Page getNextPage()
if (projectionsAdapter.isPresent()) {
dataPage = projectionsAdapter.get().adaptPage(dataPage);
}
Optional<PageFilter> deleteFilterPredicate = deletePredicate.get();
if (deleteFilterPredicate.isPresent()) {
dataPage = deleteFilterPredicate.get().apply(dataPage);
}

int batchSize = dataPage.getPositionCount();
Block[] blocks = new Block[prefilledBlocks.length];
for (int i = 0; i < prefilledBlocks.length; i++) {
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -13,17 +13,22 @@
*/
package io.trino.plugin.deltalake;

import com.google.common.base.Suppliers;
import com.google.common.collect.AbstractIterator;
import com.google.common.collect.ImmutableList;
import com.google.common.collect.ImmutableMap;
import com.google.common.collect.ImmutableSet;
import com.google.inject.Inject;
import io.trino.filesystem.Location;
import io.trino.filesystem.TrinoFileSystem;
import io.trino.filesystem.TrinoFileSystemFactory;
import io.trino.filesystem.TrinoInputFile;
import io.trino.parquet.ParquetDataSource;
import io.trino.parquet.ParquetReaderOptions;
import io.trino.parquet.reader.MetadataReader;
import io.trino.plugin.deltalake.delete.PageFilter;
import io.trino.plugin.deltalake.delete.PositionDeleteFilter;
import io.trino.plugin.deltalake.transactionlog.DeletionVectorEntry;
import io.trino.plugin.deltalake.transactionlog.DeltaLakeSchemaSupport.ColumnMappingMode;
import io.trino.plugin.hive.FileFormatDataSourceStats;
import io.trino.plugin.hive.HiveColumnHandle;
Expand All @@ -35,6 +40,7 @@
import io.trino.plugin.hive.parquet.ParquetReaderConfig;
import io.trino.plugin.hive.parquet.TrinoParquetDataSource;
import io.trino.spi.Page;
import io.trino.spi.TrinoException;
import io.trino.spi.block.Block;
import io.trino.spi.block.LongArrayBlock;
import io.trino.spi.connector.ColumnHandle;
Expand All @@ -56,13 +62,15 @@
import org.apache.parquet.schema.MessageType;
import org.apache.parquet.schema.Type;
import org.joda.time.DateTimeZone;
import org.roaringbitmap.longlong.Roaring64NavigableMap;

import java.io.IOException;
import java.io.UncheckedIOException;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import java.util.Optional;
import java.util.function.Supplier;

import static com.google.common.base.Preconditions.checkArgument;
import static com.google.common.collect.ImmutableList.toImmutableList;
Expand All @@ -71,11 +79,13 @@
import static io.airlift.slice.SizeOf.SIZE_OF_LONG;
import static io.trino.plugin.deltalake.DeltaHiveTypeTranslator.toHiveType;
import static io.trino.plugin.deltalake.DeltaLakeColumnHandle.ROW_ID_COLUMN_NAME;
import static io.trino.plugin.deltalake.DeltaLakeColumnHandle.rowPositionColumnHandle;
import static io.trino.plugin.deltalake.DeltaLakeColumnType.REGULAR;
import static io.trino.plugin.deltalake.DeltaLakeErrorCode.DELTA_LAKE_INVALID_SCHEMA;
import static io.trino.plugin.deltalake.DeltaLakeSessionProperties.getParquetMaxReadBlockRowCount;
import static io.trino.plugin.deltalake.DeltaLakeSessionProperties.getParquetMaxReadBlockSize;
import static io.trino.plugin.deltalake.DeltaLakeSessionProperties.isParquetUseColumnIndex;
import static io.trino.plugin.deltalake.transactionlog.DeltaLakeSchemaSupport.ColumnMappingMode.NONE;
import static io.trino.plugin.deltalake.delete.DeletionVectors.readDeletionVectors;
import static io.trino.plugin.deltalake.transactionlog.DeltaLakeSchemaSupport.extractSchema;
import static io.trino.plugin.deltalake.transactionlog.DeltaLakeSchemaSupport.getColumnMappingMode;
import static io.trino.plugin.hive.parquet.ParquetPageSourceFactory.PARQUET_ROW_INDEX_COLUMN;
Expand Down Expand Up @@ -172,6 +182,7 @@ public ConnectorPageSource createPageSource(
if (filteredSplitPredicate.isAll() &&
split.getStart() == 0 && split.getLength() == split.getFileSize() &&
split.getFileRowCount().isPresent() &&
split.getDeletionVector().isEmpty() &&
(regularColumns.isEmpty() || onlyRowIdColumn(regularColumns))) {
return new DeltaLakePageSource(
deltaLakeColumns,
Expand All @@ -182,11 +193,13 @@ public ConnectorPageSource createPageSource(
Optional.empty(),
split.getPath(),
split.getFileSize(),
split.getFileModifiedTime());
split.getFileModifiedTime(),
Optional::empty);
}

Location location = Location.of(split.getPath());
TrinoInputFile inputFile = fileSystemFactory.create(session).newInputFile(location, split.getFileSize());
TrinoFileSystem fileSystem = fileSystemFactory.create(session);
TrinoInputFile inputFile = fileSystem.newInputFile(location, split.getFileSize());
ParquetReaderOptions options = parquetReaderOptions.withMaxReadBlockSize(getParquetMaxReadBlockSize(session))
.withMaxReadBlockRowCount(getParquetMaxReadBlockRowCount(session))
.withUseColumnIndex(isParquetUseColumnIndex(session));
Expand All @@ -204,6 +217,9 @@ public ConnectorPageSource createPageSource(
hiveColumnHandles::add,
() -> missingColumnNames.add(column.getBaseColumnName()));
}
if (split.getDeletionVector().isPresent() && !regularColumns.contains(rowPositionColumnHandle())) {
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hiveColumnHandles.add(PARQUET_ROW_INDEX_COLUMN);
}

TupleDomain<HiveColumnHandle> parquetPredicate = getParquetTupleDomain(filteredSplitPredicate.simplify(domainCompactionThreshold), columnMappingMode, parquetFieldIdToName);

Expand All @@ -227,6 +243,19 @@ public ConnectorPageSource createPageSource(
column -> ((HiveColumnHandle) column).getType(),
HivePageSourceProvider::getProjection));

Supplier<Optional<PageFilter>> deletePredicate = Suppliers.memoize(() -> {
if (split.getDeletionVector().isEmpty()) {
return Optional.empty();
}

List<DeltaLakeColumnHandle> requiredColumns = ImmutableList.<DeltaLakeColumnHandle>builderWithExpectedSize(deltaLakeColumns.size() + 1)
.addAll(deltaLakeColumns)
.add(rowPositionColumnHandle())
.build();
PositionDeleteFilter deleteFilter = readDeletes(fileSystem, Location.of(table.location()), split.getDeletionVector().get());
return Optional.of(deleteFilter.createPredicate(requiredColumns));
});

return new DeltaLakePageSource(
deltaLakeColumns,
missingColumnNames.build(),
Expand All @@ -236,7 +265,22 @@ public ConnectorPageSource createPageSource(
projectionsAdapter,
split.getPath(),
split.getFileSize(),
split.getFileModifiedTime());
split.getFileModifiedTime(),
deletePredicate);
}

private PositionDeleteFilter readDeletes(
TrinoFileSystem fileSystem,
Location tableLocation,
DeletionVectorEntry deletionVector)
{
try {
Roaring64NavigableMap deletedRows = readDeletionVectors(fileSystem, tableLocation, deletionVector);
return new PositionDeleteFilter(deletedRows);
}
catch (IOException e) {
throw new TrinoException(DELTA_LAKE_INVALID_SCHEMA, "Failed to read deletion vectors", e);
}
}

public Map<Integer, String> loadParquetIdAndNameMapping(TrinoInputFile inputFile, ParquetReaderOptions options)
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,7 @@
import com.google.common.collect.ImmutableList;
import com.google.common.collect.ImmutableMap;
import io.airlift.slice.SizeOf;
import io.trino.plugin.deltalake.transactionlog.DeletionVectorEntry;
import io.trino.spi.HostAddress;
import io.trino.spi.SplitWeight;
import io.trino.spi.connector.ConnectorSplit;
Expand Down Expand Up @@ -47,6 +48,7 @@ public class DeltaLakeSplit
private final long fileSize;
private final Optional<Long> fileRowCount;
private final long fileModifiedTime;
private final Optional<DeletionVectorEntry> deletionVector;
private final SplitWeight splitWeight;
private final TupleDomain<DeltaLakeColumnHandle> statisticsPredicate;
private final Map<String, Optional<String>> partitionKeys;
Expand All @@ -59,6 +61,7 @@ public DeltaLakeSplit(
@JsonProperty("fileSize") long fileSize,
@JsonProperty("rowCount") Optional<Long> fileRowCount,
@JsonProperty("fileModifiedTime") long fileModifiedTime,
@JsonProperty("deletionVector") Optional<DeletionVectorEntry> deletionVector,
@JsonProperty("splitWeight") SplitWeight splitWeight,
@JsonProperty("statisticsPredicate") TupleDomain<DeltaLakeColumnHandle> statisticsPredicate,
@JsonProperty("partitionKeys") Map<String, Optional<String>> partitionKeys)
Expand All @@ -69,6 +72,7 @@ public DeltaLakeSplit(
this.fileSize = fileSize;
this.fileRowCount = requireNonNull(fileRowCount, "rowCount is null");
this.fileModifiedTime = fileModifiedTime;
this.deletionVector = requireNonNull(deletionVector, "deletionVector is null");
this.splitWeight = requireNonNull(splitWeight, "splitWeight is null");
this.statisticsPredicate = requireNonNull(statisticsPredicate, "statisticsPredicate is null");
this.partitionKeys = requireNonNull(partitionKeys, "partitionKeys is null");
Expand Down Expand Up @@ -130,6 +134,12 @@ public long getFileModifiedTime()
return fileModifiedTime;
}

@JsonProperty
public Optional<DeletionVectorEntry> getDeletionVector()
{
return deletionVector;
}

/**
* A TupleDomain representing the min/max statistics from the file this split was generated from. This does not contain any partitioning information.
*/
Expand All @@ -151,6 +161,7 @@ public long getRetainedSizeInBytes()
return INSTANCE_SIZE
+ estimatedSizeOf(path)
+ sizeOf(fileRowCount, value -> LONG_INSTANCE_SIZE)
+ sizeOf(deletionVector, DeletionVectorEntry::sizeInBytes)
+ splitWeight.getRetainedSizeInBytes()
+ statisticsPredicate.getRetainedSizeInBytes(DeltaLakeColumnHandle::getRetainedSizeInBytes)
+ estimatedSizeOf(partitionKeys, SizeOf::estimatedSizeOf, value -> sizeOf(value, SizeOf::estimatedSizeOf));
Expand All @@ -175,6 +186,7 @@ public String toString()
.add("length", length)
.add("fileSize", fileSize)
.add("rowCount", fileRowCount)
.add("deletionVector", deletionVector)
.add("statisticsPredicate", statisticsPredicate)
.add("partitionKeys", partitionKeys)
.toString();
Expand All @@ -195,13 +207,14 @@ public boolean equals(Object o)
fileSize == that.fileSize &&
path.equals(that.path) &&
fileRowCount.equals(that.fileRowCount) &&
deletionVector.equals(that.deletionVector) &&
Objects.equals(statisticsPredicate, that.statisticsPredicate) &&
Objects.equals(partitionKeys, that.partitionKeys);
}

@Override
public int hashCode()
{
return Objects.hash(path, start, length, fileSize, fileRowCount, statisticsPredicate, partitionKeys);
return Objects.hash(path, start, length, fileSize, fileRowCount, deletionVector, statisticsPredicate, partitionKeys);
}
}
Original file line number Diff line number Diff line change
Expand Up @@ -290,6 +290,7 @@ private List<DeltaLakeSplit> splitsForFile(
fileSize,
addFileEntry.getStats().flatMap(DeltaLakeFileStatistics::getNumRecords),
addFileEntry.getModificationTime(),
addFileEntry.getDeletionVector(),
SplitWeight.standard(),
statisticsPredicate,
partitionKeys));
Expand All @@ -314,6 +315,7 @@ private List<DeltaLakeSplit> splitsForFile(
fileSize,
Optional.empty(),
addFileEntry.getModificationTime(),
addFileEntry.getDeletionVector(),
SplitWeight.fromProportion(Math.min(Math.max((double) splitSize / maxSplitSize, minimumAssignedSplitWeight), 1.0)),
statisticsPredicate,
partitionKeys));
Expand Down
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
/*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package io.trino.plugin.deltalake.delete;

import io.trino.spi.Page;

import java.util.function.Function;

public interface PageFilter
extends Function<Page, Page> {}
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