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test with Aqua, minor fixes #184

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Jun 8, 2023
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test with Aqua, minor fixes #184

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9d7fa2d
test with Aqua, minor fixes
tpapp Jun 8, 2023
fac5605
add badge, tiny version bump
tpapp Jun 8, 2023
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4 changes: 2 additions & 2 deletions Project.toml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
name = "DynamicHMC"
uuid = "bbc10e6e-7c05-544b-b16e-64fede858acb"
authors = ["Tamas K. Papp <[email protected]>"]
version = "3.4.5"
version = "3.4.6"

[deps]
ArgCheck = "dce04be8-c92d-5529-be00-80e4d2c0e197"
Expand All @@ -24,8 +24,8 @@ LogDensityProblems = "1, 2"
LogExpFunctions = "0.3"
MCMCDiagnosticTools = "0.2"
ProgressMeter = "1"
TensorCast = "0.4"
SimpleUnPack = "1"
TensorCast = "0.4"
julia = "1.6"

[extras]
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1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -8,6 +8,7 @@ Implementation of robust dynamic Hamiltonian Monte Carlo methods in Julia.
[![Documentation](https://img.shields.io/badge/docs-stable-blue.svg)](https://tpapp.github.io/DynamicHMC.jl/stable)
[![Documentation](https://img.shields.io/badge/docs-master-blue.svg)](https://tpapp.github.io/DynamicHMC.jl/dev)
[![DOI](https://zenodo.org/badge/93741413.svg)](https://zenodo.org/badge/latestdoi/93741413)
[![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl)

## Overview

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2 changes: 1 addition & 1 deletion src/NUTS.jl
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Expand Up @@ -2,7 +2,7 @@
##### NUTS tree sampler implementation.
#####

export TreeOptionsNUTS
export NUTS

####
#### Trajectory and implementation
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1 change: 1 addition & 0 deletions test/Project.toml
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@@ -1,4 +1,5 @@
[deps]
Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
ArgCheck = "dce04be8-c92d-5529-be00-80e4d2c0e197"
DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
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9 changes: 8 additions & 1 deletion test/runtests.jl
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Expand Up @@ -40,10 +40,17 @@ include("test_logging.jl")
include("sample-correctness_tests.jl")

####
#### statis analysis
#### static analysis and QA
####

# do not test on older Julia versions and nightly
if VERSION >= v"1.7" && isempty(VERSION.prerelease)
include("jet.jl")
end

@testset "Aqua" begin
import Aqua
Aqua.test_all(DynamicHMC; ambiguities = false)
# testing separately, cf https://github.com/JuliaTesting/Aqua.jl/issues/77
Aqua.test_ambiguities(DynamicHMC)
end