MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

Mapping the MIMIC-III database to the OMOP schema

Website for the MIMIC Critical Care Database (currently version MIMIC-III)

Introduction to MIMIC-III, the Critical Care Database

Toolkit for evaluating and monitoring AI models in clinical settings

Repository for the paper describing MIMIC-III

IJCAI2021: Code for SafeDrug, MIMIC data processing, Medical code mapping

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

Transthoracic echocardiography and mortality in sepsis: analysis of the MIMIC-III database

Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model

A python package for removing duplicate text in clinical notes or other documents

Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction

OMOP standardization pipeline for ICU databases

Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN (IEEE TKDE)

A Python library to load and analyze the MIMIC III Critical Care Database

Rare disease identification from free-text clinical notes with ontologies and weak supervision

Prediction of ICU Readmissions Using Data at Patient Discharge using MIMICIII Database

Repo for Oxygenation project proposed by KC at Datathon