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fungal

Here are 10 public repositories matching this topic...

JTFouquier / ghost-tree

creating hybrid-gene phylogenetic trees for diversity analyses

python diversity bioinformatics python3 phylogenetic-trees phylogenetics microbiology microbiome fungi fungal microbial-ecology

Updated Aug 23, 2022
Python

everhartlab / sclerotinia-366

Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"

r reproducible-research docker-container rmarkdown reproducible-science plant-pathology fungal reproducible-paper sclerotinia sclerotinia-sclerotiorum research-compendium

Updated Apr 12, 2018
Shell

broadinstitute / fungal-wdl

Broad fungal method repository

snps bioinformatics-pipeline wdl fungal wdl-workflow firecloud

Updated Nov 14, 2023
WDL

broadinstitute / funpipe

A python3 library for building best practice fungal genomic analysis pipeline

genomics genetics python-library python3 bioinformatics-pipeline fungal infectious-disease

Updated Nov 8, 2024
HTML

obophenotype / ascomycete-phenotype-ontology

ontology phenotype fungal obofoundry phenotype-ontology ascomycete

Updated Oct 23, 2024
Shell

dizak / mothulity

Easy-to-use tool facilitating work with Mothur.

diversity easy-to-use microbial-communities 16s its fungal microbial-ecology microbial mothur 16s-rrna

Updated Jul 20, 2020
JavaScript

AshrithSagar / Classification-Fungal10x

Fungal classification at 10x resolution. Multiple Instance Learning (MIL)

deep-learning tensorflow classification binary-classification fungal multiple-instance-learning

Updated Jul 27, 2024
Python

akshayparopkari / discover_tfbs

Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.

python bash machine-learning bioinformatics transcription-factors r pathogen biology scripting computational-biology binding-sites fungal biofilm candida-albicans

Updated Jun 17, 2024
Python

iPsychonaut / FunDiSPipe

FunDiSPipe is a comprehensive bioinformatics pipeline designed for the Fungal Diversity Survey (FunDiS), specifically tailored for analyzing fungal ITS data from Oxford Nanopore Technologies sequencing.

genetics fungal barcoding

Updated Apr 14, 2024
Python

Sorrelsprout / shroombase

Mushroom Catalog

database fungi mushrooms database-ids fungus mushroom fungal

Updated Nov 5, 2023
HTML

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