A compilation of widely available forensic allele frequencies as an R package

Scripts and data processing notes for Russian exome sequencing AF paper

Tutorial for performing redundancy analysis

A tool to find reads supporting/opposing structural variant breakpoints

An R script for generating allele frequencies from DNA/amino acid sequence alignments.

A Python script that generate population genotype frequency file from 1000G data

Code for NCD1 and NCD2 statistics to detect long-term balancing selection

Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations

(S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.

ALFRED Revival is an open-source project to rebuild the allele frequency database created and hosted by the Kidd Lab at Yale University. Due to a lack of ongoing support for the project, the original ALFRED has become difficult to use. ALFRED Revival is an interface utilizing modern technologies to interact with the new ALFRED Revival database.

Complexity of Infection Estimation with Allele Frequencies

A command-line parser for VCF files designed for population genetics analyses.

A tool for downloading HLA alleles, epitopes and frequencies

A python library to develop genomic data simulators

Identification of cancer-causing variants

Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.

Code associated with 'Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic'

Calculate allele frequencies from a sequence multialignment.

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

Long read structural variants in rare disease cohort