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Github Action authored and vivian-rook committed Jun 6, 2024
1 parent 5b6af9c commit 992306a
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Showing 6 changed files with 6 additions and 11 deletions.
8 changes: 2 additions & 6 deletions images/singleuser/Dockerfile
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Expand Up @@ -114,7 +114,7 @@ RUN apt-get update --yes && \
libssl-dev

# Install rstudio-server
ENV RSTUDIO_SERVER_URL https://download2.rstudio.org/server/noble/amd64/rstudio-server-2023.12.1-402-amd64.deb
ENV RSTUDIO_SERVER_URL https://download2.rstudio.org/server/jammy/amd64/rstudio-server-2023.12.1-402-amd64.deb
RUN curl --silent --location --fail ${RSTUDIO_SERVER_URL} > /tmp/rstudio-server.deb
RUN gdebi -n /tmp/rstudio-server.deb && rm /tmp/rstudio-server.deb

Expand Down Expand Up @@ -142,6 +142,7 @@ COPY r/Rprofile.site /usr/lib/R/etc/Rprofile.site
# RStudio needs its own config
COPY r/rsession.conf /etc/rstudio/rsession.conf

USER root
# Install the R Kernel
RUN r -e "install.packages('IRkernel', version='1.3.2')" && \
r -e "IRkernel::installspec(prefix='${VENV_DIR}')" && \
Expand Down Expand Up @@ -226,11 +227,6 @@ RUN /tmp/install-sql-tool

## Done installing sql access tool

RUN pip install --no-cache-dir \
jupyterlab-link-share>=0.2.4 \
# voila # 0.4.0 downgrades jupyter-server to 1.24.0 appears to work on 2.0 from 0.5.0, though not yet released.
bash_kernel

# Install the bash kernel
RUN python -m bash_kernel.install --sys-prefix

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2 changes: 1 addition & 1 deletion images/singleuser/r/Rprofile.site
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@@ -1,7 +1,7 @@
# Use RStudio's CRAN mirror to get binary packages
# 'latest' just means it has all available versions.
# We can specify version numbers in devtools::install_version
options(repos = c(CRAN = "https://packagemanager.rstudio.com/all/__linux__/jammy/latest"))
options(repos = c(CRAN = "https://packagemanager.rstudio.com/all/__linux__/noble/latest"))

# RStudio's CRAN mirror needs this to figure out which binary package to serve.
# If not set properly, it will just serve up source packages
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2 changes: 1 addition & 1 deletion images/singleuser/r/cran.list
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@@ -1 +1 @@
deb [arch=amd64 signed-by=/etc/apt/trusted.gpg.d/cran.gpg] https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/
deb [arch=amd64 signed-by=/etc/apt/trusted.gpg.d/cran.gpg] https://cloud.r-project.org/bin/linux/ubuntu noble-cran40/
2 changes: 1 addition & 1 deletion images/singleuser/r/rsession.conf
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@@ -1,2 +1,2 @@
# Use binary packages!
r-cran-repos=https://packagemanager.rstudio.com/all/__linux__/jammy/latest
r-cran-repos=https://packagemanager.rstudio.com/all/__linux__/noble/latest
1 change: 0 additions & 1 deletion images/singleuser/requirements.txt
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Expand Up @@ -27,7 +27,6 @@ streamlit
pandas
scipy
scikit-learn
scikit-neuralnetwork

# Scraping
lxml
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2 changes: 1 addition & 1 deletion paws/values.yaml
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Expand Up @@ -280,7 +280,7 @@ jupyterhub:
fsGid: 52771
image:
name: quay.io/wikimedia-paws-prod/singleuser
tag: pr-431 # singleuser tag managed by github actions
tag: pr-417 # singleuser tag managed by github actions
pullPolicy: Always
memory:
guarantee: 0.70G
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