ci(pre-commit.ci): autoupdate (#206)

* ci(pre-commit.ci): autoupdate

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.2.0](astral-sh/ruff-pre-commit@v0.1.9...v0.2.0)
- [github.com/psf/black: 23.12.1 → 24.1.1](psf/black@23.12.1...24.1.1)
- [github.com/abravalheri/validate-pyproject: v0.15 → v0.16](abravalheri/validate-pyproject@v0.15...v0.16)

* style(pre-commit.ci): auto fixes [...]

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.pre-commit-config.yaml

@@ -20,18 +20,18 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.9
+    rev: v0.2.0
     hooks:
       - id: ruff
         args: [--fix]
 
   - repo: https://github.com/psf/black
-    rev: 23.12.1
+    rev: 24.1.1
     hooks:
       - id: black
 
   - repo: https://github.com/abravalheri/validate-pyproject
-    rev: v0.15
+    rev: v0.16
     hooks:
       - id: validate-pyproject
 

scripts/gather.py

@@ -1,4 +1,5 @@
 """gather metadata from all files in test/data with all nd readers."""
+
 import contextlib
 import json
 from pathlib import Path

scripts/nd2_describe.py

@@ -4,6 +4,7 @@
 
     python scripts/nd2_describe.py > tests/samples_metadata.json
 """
+
 import struct
 from dataclasses import asdict
 from pathlib import Path

src/nd2/_binary.py

@@ -1,4 +1,5 @@
 """Utilities for binary layers in ND2 files."""
+
 from __future__ import annotations
 
 import io
@@ -131,12 +132,10 @@ def __init__(self, data: list[BinaryLayer]) -> None:
         self._data = data
 
     @overload
-    def __getitem__(self, key: int) -> BinaryLayer:
-        ...
+    def __getitem__(self, key: int) -> BinaryLayer: ...
 
     @overload
-    def __getitem__(self, key: slice) -> list[BinaryLayer]:
-        ...
+    def __getitem__(self, key: slice) -> list[BinaryLayer]: ...
 
     def __getitem__(self, key: int | slice) -> BinaryLayer | list[BinaryLayer]:
         return self._data[key]

src/nd2/_parse/_chunk_decode.py

@@ -1,4 +1,5 @@
 """FIXME: this has a lot of code duplication with _chunkmap.py."""
+
 from __future__ import annotations
 
 import mmap

src/nd2/_parse/_legacy_xml.py

@@ -5,6 +5,7 @@
 all of this logic is duplicated in _clx_xml.py.
 _legacy.py just needs some slight updates to deal with different parsing results.
 """
+
 from __future__ import annotations
 
 import re

src/nd2/_sdk_types.py

@@ -1,4 +1,5 @@
 """Various raw dict structures likely to be found in an ND2 file."""
+
 from __future__ import annotations
 
 from enum import IntEnum, auto

src/nd2/nd2file.py

@@ -343,16 +343,17 @@ def experiment(self) -> list[ExpLoop]:
     @overload
     def events(
         self, *, orient: Literal["records"] = ..., null_value: Any = ...
-    ) -> ListOfDicts:
-        ...
+    ) -> ListOfDicts: ...
 
     @overload
-    def events(self, *, orient: Literal["list"], null_value: Any = ...) -> DictOfLists:
-        ...
+    def events(
+        self, *, orient: Literal["list"], null_value: Any = ...
+    ) -> DictOfLists: ...
 
     @overload
-    def events(self, *, orient: Literal["dict"], null_value: Any = ...) -> DictOfDicts:
-        ...
+    def events(
+        self, *, orient: Literal["dict"], null_value: Any = ...
+    ) -> DictOfDicts: ...
 
     def events(
         self,
@@ -717,9 +718,11 @@ def frame_metadata(self, seq_index: int | tuple) -> FrameMetadata | dict:
         """
         idx = cast(
             int,
-            self._seq_index_from_coords(seq_index)
-            if isinstance(seq_index, tuple)
-            else seq_index,
+            (
+                self._seq_index_from_coords(seq_index)
+                if isinstance(seq_index, tuple)
+                else seq_index
+            ),
         )
         return self._rdr.frame_metadata(idx)
 
@@ -1233,8 +1236,7 @@ def imread(
     xarray: Literal[False] = ...,
     validate_frames: bool = ...,
     read_using_sdk: bool | None = None,
-) -> np.ndarray:
-    ...
+) -> np.ndarray: ...
 
 
 @overload
@@ -1245,8 +1247,7 @@ def imread(
     xarray: Literal[True],
     validate_frames: bool = ...,
     read_using_sdk: bool | None = None,
-) -> xr.DataArray:
-    ...
+) -> xr.DataArray: ...
 
 
 @overload
@@ -1257,8 +1258,7 @@ def imread(
     xarray: Literal[False] = ...,
     validate_frames: bool = ...,
     read_using_sdk: bool | None = None,
-) -> dask.array.core.Array:
-    ...
+) -> dask.array.core.Array: ...
 
 
 def imread(

src/nd2/readers/__init__.py

@@ -1,4 +1,5 @@
 """Reader subclasses for legacy and modern ND2 files."""
+
 from ._legacy.legacy_reader import LegacyReader
 from ._modern.modern_reader import ModernReader
 from .protocol import ND2Reader

src/nd2/structures.py

@@ -346,9 +346,9 @@ class Volume:
     voxelCount: tuple[int, int, int]
     componentMaxima: list[float] | None = None
     componentMinima: list[float] | None = None
-    pixelToStageTransformationMatrix: tuple[
-        float, float, float, float, float, float
-    ] | None = None
+    pixelToStageTransformationMatrix: (
+        tuple[float, float, float, float, float, float] | None
+    ) = None
 
     # NIS Microscope Absolute frame in um =
     # pixelToStageTransformationMatrix * (X_in_px,  Y_in_px,  1) + stagePositionUm

tests/test_aicsimage.py

@@ -3,6 +3,7 @@
 
 It may need updating if it changes upstream
 """
+
 import sys
 from pathlib import Path
 from typing import List, Optional, Tuple

tests/test_metadata.py

@@ -11,7 +11,7 @@
 from nd2._parse._chunk_decode import ND2_FILE_SIGNATURE
 
 sys.path.append(str(Path(__file__).parent.parent / "scripts"))
-from nd2_describe import get_nd2_stats  # noqa: E402
+from nd2_describe import get_nd2_stats
 
 try:
     import xarray as xr