Changed imports for conda build

tjcreedy · Apr 18, 2024 · 8b39feb · 8b39feb
1 parent ed232a3
commit 8b39feb
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Showing 4 changed files with 7 additions and 11 deletions.
diff --git a/metamate/binning.py b/metamate/binning.py
@@ -4,8 +4,6 @@
 """Functions for assigning clades to a set of sequences"""
 
 # Imports
-
-
 import os
 import sys
 import subprocess
@@ -22,8 +20,6 @@
 
 
 # Function definitions
-
-
 def parse_taxa(taxafile, names):
     taxa = defaultdict(set)
     allnames = set()

diff --git a/metamate/core.py b/metamate/core.py
@@ -21,9 +21,9 @@
 
 from Bio.SeqIO.FastaIO import SimpleFastaParser
 
-import filterlength
-import filtertranslate
-import filterreference
+from metamate import filterlength
+from metamate import filtertranslate
+from metamate import filterreference
 
 
 def count_categories(catdict, metric):

diff --git a/metamate/filterreference.py b/metamate/filterreference.py
@@ -9,9 +9,9 @@
 import re
 import sys
 import pysam
-import binning
 from Bio import AlignIO, SeqIO
 
+from metamate import binning
 
 # Functions
 def make_temp_bbmapwd(path, name):

diff --git a/metamate/metamate.py b/metamate/metamate.py
@@ -15,9 +15,9 @@
 from functools import partial
 from shutil import which
 
-import core
-import binning
-import filterlength
+from metamate import core
+from metamate import binning
+from metamate import filterlength
 
 
 # Class definitions