Re-run revdeps

revdep/README.md

@@ -1,15 +1,30 @@
 # Revdeps
 
-## New problems (8)
+## Failed to check (9)
+
+|package        |version |error |warning |note |
+|:--------------|:-------|:-----|:-------|:----|
+|BiocFileCache  |?       |      |        |     |
+|BiocOncoTK     |?       |      |        |     |
+|CompoundDb     |?       |      |        |     |
+|grasp2db       |?       |      |        |     |
+|msPurity       |?       |      |        |     |
+|NoRCE          |?       |      |        |     |
+|Organism.dplyr |?       |      |        |     |
+|SQLDataFrame   |?       |      |        |     |
+|synaptome.db   |?       |      |        |     |
+
+## New problems (9)
 
 |package             |version |error  |warning |note |
 |:-------------------|:-------|:------|:-------|:----|
-|[CDMConnector](problems.md#cdmconnector)|1.1.2   |__+2__ |        |1    |
-|[DrugUtilisation](problems.md#drugutilisation)|0.3.3   |__+1__ |        |     |
-|[editbl](problems.md#editbl)|0.9.6   |__+2__ |        |     |
-|[IncidencePrevalence](problems.md#incidenceprevalence)|0.4.1   |__+3__ |        |     |
-|[mlr3db](problems.md#mlr3db)|0.5.0   |__+1__ |        |     |
+|[CDMConnector](problems.md#cdmconnector)|1.1.4   |__+2__ |        |1    |
+|[DrugUtilisation](problems.md#drugutilisation)|0.4.0   |__+2__ |        |     |
+|[editbl](problems.md#editbl)|1.0.1   |__+2__ |        |     |
+|[IncidencePrevalence](problems.md#incidenceprevalence)|0.5.1   |__+3__ |        |     |
+|[mlr3db](problems.md#mlr3db)|0.5.1   |__+1__ |        |     |
 |[modeldb](problems.md#modeldb)|0.2.3   |__+1__ |        |     |
-|[PatientProfiles](problems.md#patientprofiles)|0.3.1   |__+2__ |        |     |
+|[PatientProfiles](problems.md#patientprofiles)|0.4.0   |__+2__ |        |     |
 |[RPresto](problems.md#rpresto)|1.4.5   |__+1__ |        |     |
+|[sparklyr](problems.md#sparklyr)|1.8.3   |       |__+1__  |1    |
 

revdep/cran.md

@@ -1,8 +1,8 @@
 ## revdepcheck results
 
-We checked 90 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 101 reverse dependencies (92 from CRAN + 9 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 8 new problems
+ * We saw 9 new problems
  * We failed to check 0 packages
 
 Issues with CRAN packages are summarised below.
@@ -16,6 +16,7 @@ Issues with CRAN packages are summarised below.
 
 * DrugUtilisation
   checking tests ... ERROR
+  checking re-building of vignette outputs ... ERROR
 
 * editbl
   checking examples ... ERROR
@@ -39,3 +40,6 @@ Issues with CRAN packages are summarised below.
 * RPresto
   checking tests ... ERROR
 
+* sparklyr
+  checking S3 generic/method consistency ... WARNING
+

revdep/failures.md

@@ -1 +1,315 @@
-*Wow, no problems at all. :)*
+# BiocFileCache
+
+<details>
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/BiocFileCache
+* Number of recursive dependencies: 110
+
+Run `revdepcheck::cloud_details(, "BiocFileCache")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# BiocOncoTK
+
+<details>
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/BiocOncoTK
+* Number of recursive dependencies: 216
+
+Run `revdepcheck::cloud_details(, "BiocOncoTK")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# CompoundDb
+
+<details>
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/CompoundDb
+* Number of recursive dependencies: 124
+
+Run `revdepcheck::cloud_details(, "CompoundDb")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# grasp2db
+
+<details>
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/grasp2db
+* Number of recursive dependencies: 128
+
+Run `revdepcheck::cloud_details(, "grasp2db")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# msPurity
+
+<details>
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/msPurity
+* Number of recursive dependencies: 165
+
+Run `revdepcheck::cloud_details(, "msPurity")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NoRCE
+
+<details>
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NoRCE
+* Number of recursive dependencies: 157
+
+Run `revdepcheck::cloud_details(, "NoRCE")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# Organism.dplyr
+
+<details>
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/Organism.dplyr
+* Number of recursive dependencies: 138
+
+Run `revdepcheck::cloud_details(, "Organism.dplyr")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# SQLDataFrame
+
+<details>
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/SQLDataFrame
+* Number of recursive dependencies: 89
+
+Run `revdepcheck::cloud_details(, "SQLDataFrame")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# synaptome.db
+
+<details>
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/synaptome.db
+* Number of recursive dependencies: 138
+
+Run `revdepcheck::cloud_details(, "synaptome.db")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```