COMP: Remove ITK_DISALLOW_COPY_AND_MOVE from UserData struct's #74
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Elastix | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| # The CMake configure and build commands are platform agnostic and should work equally | |
| # well on Windows or Mac. You can convert this to a matrix build if you need | |
| # cross-platform coverage. | |
| # See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 3 | |
| matrix: | |
| os: [ubuntu-22.04, windows-2022, macos-12] | |
| include: | |
| - os: ubuntu-22.04 | |
| c-compiler: "gcc" | |
| cxx-compiler: "g++" | |
| itk-git-tag: "v5.4.0" | |
| cmake-build-type: "Release" | |
| ANNLib: "libANNlib-5.2.so" | |
| ANNLib2: "libANNlib-5.2.so.1" | |
| - os: windows-2022 | |
| c-compiler: "cl.exe" | |
| cxx-compiler: "cl.exe" | |
| itk-git-tag: "v5.4.0" | |
| cmake-build-type: "Release" | |
| ANNLib: "ANNlib-5.2.dll" | |
| vcvars64: "C:/Program Files/Microsoft Visual Studio/2022/Enterprise/VC/Auxiliary/Build/vcvars64.bat" | |
| - os: macos-12 | |
| c-compiler: "clang" | |
| cxx-compiler: "clang++" | |
| itk-git-tag: "v5.4.0" | |
| cmake-build-type: "Release" | |
| ANNLib: "libANNlib-5.2.1.dylib" | |
| ANNLib2: "libANNlib-5.2.dylib" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Make directory structure | |
| run: | | |
| items=(*) | |
| mkdir Elastix-source | |
| mv ${items[*]} Elastix-source | |
| mv .editorconfig Elastix-source | |
| mv .clang-format Elastix-source | |
| mv Elastix-source/Dockerfile . | |
| shell: bash | |
| - uses: actions/cache@v3 | |
| id: cache | |
| with: | |
| path: | | |
| ITK-build | |
| ITK-source | |
| key: ${{ matrix.itk-git-tag }}-${{ matrix.os }}-${{ matrix.cmake-build-type }} | |
| - name: Set up Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: 3.8 | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install ninja | |
| - name: Get specific version of CMake, Ninja | |
| uses: lukka/[email protected] | |
| - name: Download ITK | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| git clone https://github.com/InsightSoftwareConsortium/ITK.git ITK-source | |
| cd ITK-source | |
| git checkout ${{ matrix.itk-git-tag }} | |
| - name: Build ITK | |
| if: ${{ steps.cache.outputs.cache-hit != 'true' && !startsWith(matrix.os, 'windows') }} | |
| run: | | |
| mkdir ITK-build | |
| cd ITK-build | |
| cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_EXAMPLES=OFF -DBUILD_TESTING:BOOL=OFF -DITK_LEGACY_REMOVE=ON -GNinja ../ITK-source | |
| ninja | |
| - name: Build ITK | |
| if: steps.cache.outputs.cache-hit != 'true' && startsWith(matrix.os, 'windows') | |
| run: | | |
| mkdir ITK-build | |
| cd ITK-build | |
| call "${{ matrix.vcvars64 }}" | |
| cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_EXAMPLES=OFF -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK-source | |
| ninja | |
| shell: cmd | |
| - name: Install requirements of PythonTests | |
| run: | | |
| python -m pip install -r ${{ github.workspace }}/Elastix-source/Testing/PythonTests/requirements.txt | |
| - name: Configure CTest script | |
| shell: bash | |
| run: | | |
| operating_system="${{ matrix.os }}" | |
| cat > dashboard.cmake << EOF | |
| set(CTEST_SITE "GitHubActions") | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}" CTEST_DASHBOARD_ROOT) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/Elastix-source" CTEST_SOURCE_DIRECTORY) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/Elastix-build" CTEST_BINARY_DIRECTORY) | |
| set(dashboard_source_name "${GITHUB_REPOSITORY}") | |
| set(branch "${GITHUB_REF#refs/heads/}") | |
| set(sha "${GITHUB_SHA}") | |
| set(dashboard_model "Experimental") | |
| set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}-\${sha}") | |
| set(CTEST_UPDATE_VERSION_ONLY 1) | |
| set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL}) | |
| set(CTEST_BUILD_CONFIGURATION "Release") | |
| set(CTEST_CMAKE_GENERATOR "Ninja") | |
| set(dashboard_no_clean 1) | |
| set(ENV{CC} ${{ matrix.c-compiler }}) | |
| set(ENV{CXX} ${{ matrix.cxx-compiler }}) | |
| if(WIN32) | |
| set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}") | |
| endif() | |
| set(dashboard_cache " | |
| ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build | |
| ELASTIX_USE_GTEST:BOOL=ON | |
| USE_ALL_COMPONENTS:BOOL=ON | |
| BUILD_TESTING:BOOL=ON | |
| ") | |
| string(TIMESTAMP build_date "%Y-%m-%d") | |
| message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}") | |
| message("CTEST_SITE= \${CTEST_SITE}") | |
| include(\${CTEST_SOURCE_DIRECTORY}/Testing/Dashboard/elxCommonCDash.cmake) | |
| EOF | |
| cat dashboard.cmake | |
| - name: Test MacOs | |
| if: startsWith(matrix.os, 'macos') | |
| run: | | |
| ctest --output-on-failure -VV -j 2 -E "elastix_run_example_COMPARE_IM|elastix_run_3DCT_lung.MI.bspline.ASGD.001_COMPARE_TP|elastix_run_3DCT_lung.NMI.bspline.ASGD.001_COMPARE_TP" -S dashboard.cmake | |
| - name: Test Windows | |
| if: startsWith(matrix.os, 'windows') | |
| run: | | |
| call "${{ matrix.vcvars64 }}" | |
| ctest --output-on-failure -VV -j 2 -E "elastix_run_example_COMPARE_IM|elastix_run_3DCT_lung.MI.bspline.ASGD.001_COMPARE_TP" -S dashboard.cmake | |
| shell: cmd | |
| - name: Test Ubuntu | |
| if: startsWith(matrix.os, 'ubuntu') | |
| run: | | |
| ctest --output-on-failure -VV -j 2 -E "elastix_run_example_COMPARE_IM|elastix_run_3DCT_lung.MI.bspline.ASGD.001_COMPARE_TP" -S dashboard.cmake | |
| - name: Build externalproject example | |
| if: ${{ !startsWith(matrix.os, 'windows') }} | |
| run: | | |
| mkdir externalproject-build | |
| cd externalproject-build | |
| cmake -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE=${{ matrix.cmake-build-type }} -DElastix_DIR=${{ github.workspace }}/Elastix-build -GNinja ../Elastix-source/dox/externalproject | |
| ninja | |
| - name: Build externalproject example | |
| if: startsWith(matrix.os, 'windows') | |
| run: | | |
| mkdir externalproject-build | |
| cd externalproject-build | |
| call "${{ matrix.vcvars64 }}" | |
| cmake -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE=${{ matrix.cmake-build-type }} -DElastix_DIR=${{ github.workspace }}/Elastix-build -GNinja ../Elastix-source/dox/externalproject | |
| ninja | |
| shell: cmd | |
| - name: Run externalproject example | |
| if: ${{ !startsWith(matrix.os, 'windows') }} | |
| run: | | |
| externalproject-build/elastix_translation_example | |
| - name: Run externalproject example | |
| if: startsWith(matrix.os, 'windows') | |
| run: | | |
| set path=${{ github.workspace }}\Elastix-build\bin | |
| externalproject-build\elastix_translation_example.exe | |
| shell: cmd | |
| - name: Prepare Artifacts Unix | |
| if: ${{ !startsWith(matrix.os, 'windows') }} | |
| shell: bash | |
| run: | | |
| mkdir bin | |
| mkdir lib | |
| mkdir uploads | |
| mv Elastix-build/bin/elastix bin | |
| mv Elastix-build/bin/transformix bin | |
| mv Elastix-build/bin/${{ matrix.ANNLib }} lib | |
| mv Elastix-build/bin/${{ matrix.ANNLib2 }} lib | |
| mv Elastix-source/NOTICE uploads | |
| mv Elastix-source/LICENSE uploads | |
| mv bin uploads | |
| mv lib uploads | |
| - name: Prepare Artifacts Windows | |
| if: startsWith(matrix.os, 'windows') | |
| shell: bash | |
| run: | | |
| mkdir uploads | |
| mv Elastix-source/NOTICE uploads | |
| mv Elastix-source/LICENSE uploads | |
| mv Elastix-build/bin/elastix.exe uploads | |
| mv Elastix-build/bin/transformix.exe uploads | |
| mv Elastix-build/bin/${{ matrix.ANNLib }} uploads | |
| - name: Publish Artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: "${{ matrix.os }}" | |
| path: uploads | |
| - name: Login to Docker Hub | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') && startsWith(matrix.os, 'ubuntu') | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| - name: Build and push | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') && startsWith(matrix.os, 'ubuntu') | |
| run: | | |
| mkdir output | |
| docker build -t superelastix/elastix:${GITHUB_REF#refs/tags/} . | |
| docker run -u $UID:$GROUPS --mount type=bind,source="$(pwd)"/output,target=/out -v "$(pwd)"/Elastix-source/Testing/Data:/elastix/ superelastix/elastix:${GITHUB_REF#refs/tags/} elastix -out /out/ -p /elastix/parameters.3D.NC.euler.ASGD.001.txt -f /elastix/3DCT_lung_baseline.mha -m /elastix/3DCT_lung_followup.mha | |
| docker push superelastix/elastix:${GITHUB_REF#refs/tags/} | |