COMP: Disable nbsphinx #123
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| name: Build, test, publish | |
| on: [push,pull_request] | |
| env: | |
| itk-git-tag: "v5.4rc03" | |
| jobs: | |
| build-test-cxx: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 3 | |
| matrix: | |
| os: [ubuntu-22.04, windows-2022, macos-12] | |
| include: | |
| - os: ubuntu-22.04 | |
| c-compiler: "gcc" | |
| cxx-compiler: "g++" | |
| cmake-build-type: "MinSizeRel" | |
| - os: windows-2022 | |
| c-compiler: "cl.exe" | |
| cxx-compiler: "cl.exe" | |
| cmake-build-type: "Release" | |
| - os: macos-12 | |
| c-compiler: "clang" | |
| cxx-compiler: "clang++" | |
| cmake-build-type: "MinSizeRel" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| path: Ex | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install ninja | |
| - name: Get specific version of CMake, Ninja | |
| uses: lukka/[email protected] | |
| - name: Download ITK | |
| run: | | |
| cd .. | |
| git clone https://github.com/InsightSoftwareConsortium/ITK.git | |
| cd ITK | |
| git checkout ${{ env.itk-git-tag }} | |
| - name: Build ITK | |
| if: matrix.os != 'windows-2022' | |
| run: | | |
| cd .. | |
| mkdir ITK-build | |
| cd ITK-build | |
| cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK | |
| ninja | |
| - name: Build ITK | |
| if: matrix.os == 'windows-2022' | |
| run: | | |
| cd .. | |
| mkdir ITK-build | |
| cd ITK-build | |
| call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
| cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK | |
| ninja | |
| shell: cmd | |
| - name: Fetch CTest driver script | |
| run: | | |
| curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O | |
| - name: Configure CTest script | |
| shell: bash | |
| run: | | |
| mv Ex ../../ | |
| operating_system="${{ matrix.os }}" | |
| cat > dashboard.cmake << EOF | |
| set(CTEST_SITE "GitHubActions") | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../Ex" CTEST_SOURCE_DIRECTORY) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../bld/" CTEST_BINARY_DIRECTORY) | |
| set(dashboard_source_name "${GITHUB_REPOSITORY}") | |
| if(ENV{GITHUB_REF} MATCHES "master") | |
| set(branch "-master") | |
| set(dashboard_model "Continuous") | |
| else() | |
| set(branch "-${GITHUB_REF}") | |
| set(dashboard_model "Experimental") | |
| endif() | |
| set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}") | |
| set(CTEST_UPDATE_VERSION_ONLY 1) | |
| set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL}) | |
| set(CTEST_BUILD_CONFIGURATION "Release") | |
| set(CTEST_CMAKE_GENERATOR "Ninja") | |
| set(CTEST_CUSTOM_WARNING_EXCEPTION | |
| \${CTEST_CUSTOM_WARNING_EXCEPTION} | |
| # macOS Azure VM Warning | |
| "ld: warning: text-based stub file" | |
| ) | |
| set(dashboard_no_clean 1) | |
| set(ENV{CC} ${{ matrix.c-compiler }}) | |
| set(ENV{CXX} ${{ matrix.cxx-compiler }}) | |
| set(dashboard_cache " | |
| ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build | |
| BUILD_TESTING:BOOL=ON | |
| ") | |
| string(TIMESTAMP build_date "%Y-%m-%d") | |
| message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}") | |
| message("CTEST_SITE = \${CTEST_SITE}") | |
| include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake) | |
| EOF | |
| cat dashboard.cmake | |
| - name: Build and test | |
| if: matrix.os != 'windows-2022' | |
| run: | | |
| ctest -j 2 -VV -S dashboard.cmake | |
| - name: Build and test | |
| if: matrix.os == 'windows-2022' | |
| run: | | |
| call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
| ctest -j 2 -VV -S dashboard.cmake | |
| shell: cmd | |
| build-test-python-superbuild: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 3 | |
| matrix: | |
| os: [ubuntu-22.04, windows-2022, macos-12] | |
| include: | |
| - os: ubuntu-22.04 | |
| c-compiler: "gcc" | |
| cxx-compiler: "g++" | |
| cmake-build-type: "MinSizeRel" | |
| - os: windows-2022 | |
| c-compiler: "cl.exe" | |
| cxx-compiler: "cl.exe" | |
| cmake-build-type: "Release" | |
| - os: macos-12 | |
| c-compiler: "clang" | |
| cxx-compiler: "clang++" | |
| cmake-build-type: "MinSizeRel" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| path: Ex | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install ninja | |
| - name: Get specific version of CMake, Ninja | |
| uses: lukka/[email protected] | |
| - name: Fetch CTest driver script | |
| run: | | |
| curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKSphinxExamples/dashboard/itkexamples_common.cmake -O | |
| - name: Configure CTest script | |
| shell: bash | |
| run: | | |
| mv Ex ../../ | |
| operating_system="${{ matrix.os }}" | |
| cat > dashboard.cmake << EOF | |
| set(CTEST_SITE "GitHubActions") | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../Ex" CTEST_SOURCE_DIRECTORY) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../bld/" CTEST_BINARY_DIRECTORY) | |
| set(dashboard_superbuild 1) | |
| if(ENV{GITHUB_REF} MATCHES "master") | |
| set(branch "-master") | |
| set(dashboard_model "Continuous") | |
| else() | |
| set(branch "-${GITHUB_REF}") | |
| set(dashboard_model "Experimental") | |
| endif() | |
| set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}") | |
| set(CTEST_UPDATE_VERSION_ONLY 1) | |
| set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL}) | |
| set(CTEST_BUILD_CONFIGURATION "Release") | |
| set(CTEST_CMAKE_GENERATOR "Ninja") | |
| set(CTEST_CUSTOM_WARNING_EXCEPTION | |
| \${CTEST_CUSTOM_WARNING_EXCEPTION} | |
| # macOS Azure VM Warning | |
| "ld: warning: text-based stub file" | |
| ) | |
| set(dashboard_no_clean 1) | |
| set(ENV{CC} ${{ matrix.c-compiler }}) | |
| set(ENV{CXX} ${{ matrix.cxx-compiler }}) | |
| if(WIN32) | |
| set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}") | |
| endif() | |
| set(dashboard_cache " | |
| USE_GIT_PROTOCOL:BOOL=OFF | |
| BUILD_TESTING:BOOL=ON | |
| ") | |
| string(TIMESTAMP build_date "%Y-%m-%d") | |
| message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}") | |
| message("CTEST_SITE = \${CTEST_SITE}") | |
| include(\${CTEST_SCRIPT_DIRECTORY}/itkexamples_common.cmake) | |
| EOF | |
| cat dashboard.cmake | |
| - name: Build and test | |
| if: matrix.os != 'windows-2022' | |
| run: | | |
| ctest -j 2 -VV -S dashboard.cmake | |
| - name: Build and test | |
| if: matrix.os == 'windows-2022' | |
| run: | | |
| call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
| ctest -j 2 -VV -S dashboard.cmake | |
| shell: cmd | |
| build-test-notebooks: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 3 | |
| matrix: | |
| os: [ubuntu-22.04, windows-2022, macos-12] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install ninja | |
| python -m pip install itk>=5.4rc3 | |
| python -m pip install matplotlib | |
| python -m pip install itkwidgets | |
| # Issues with 5.7.0 | |
| # https://github.com/InsightSoftwareConsortium/ITKSphinxExamples/issues/407 | |
| python -m pip install traitlets==5.6.0 pytest nbmake | |
| - name: Test notebooks | |
| run: | | |
| pytest --nbmake --nbmake-timeout=30000 | |
| build-test-documentation: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 3 | |
| matrix: | |
| os: [ubuntu-22.04] | |
| include: | |
| - os: ubuntu-22.04 | |
| c-compiler: "gcc" | |
| cxx-compiler: "g++" | |
| cmake-build-type: "Release" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| path: Ex | |
| submodules: recursive | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Get specific version of CMake, Ninja | |
| uses: lukka/[email protected] | |
| - name: Install build dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install gnuplot dvipng | |
| sudo apt-get install texlive-full | |
| sudo apt-get install curl | |
| curl -LO https://github.com/jgm/pandoc/releases/download/3.1.6/pandoc-3.1.6-1-amd64.deb | |
| sudo apt-get install ./pandoc-3.1.6-1-amd64.deb | |
| sudo apt-get install imagemagick | |
| python -m pip install --upgrade pip | |
| python -m pip install ninja | |
| python -m pip install 'sphinx==4.4.0' 'docutils<0.18' | |
| python -m pip install --ignore-installed six | |
| python -m pip install ipython | |
| echo "Workspace: ${{ github.workspace }}" | |
| - name: Remove Duplicate Declaration Warnings | |
| run: | | |
| SITE_PACKAGES_DIR=$(python3 "-c" "from distutils import sysconfig; print(sysconfig.get_python_lib())") | |
| sed -i "6559d" ${SITE_PACKAGES_DIR}/sphinx/domains/cpp.py | |
| - name: Fetch CTest driver script | |
| run: | | |
| curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKSphinxExamples/dashboard/itkexamples_common.cmake -O | |
| - name: Configure CTest script | |
| shell: bash | |
| run: | | |
| mv Ex ../../ | |
| operating_system="${{ matrix.os }}" | |
| cat > dashboard.cmake << EOF | |
| set(CTEST_SITE "GitHubActions") | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../Ex" CTEST_SOURCE_DIRECTORY) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../bld/" CTEST_BINARY_DIRECTORY) | |
| set(dashboard_superbuild 1) | |
| if(ENV{GITHUB_REF} MATCHES "master") | |
| set(branch "-master") | |
| set(dashboard_model "Continuous") | |
| else() | |
| set(branch "-${GITHUB_REF}") | |
| set(dashboard_model "Experimental") | |
| endif() | |
| set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}-docs") | |
| set(CTEST_UPDATE_VERSION_ONLY 1) | |
| set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL}) | |
| set(CTEST_BUILD_CONFIGURATION "Release") | |
| set(CTEST_CMAKE_GENERATOR "Ninja") | |
| set(CTEST_CUSTOM_WARNING_EXCEPTION | |
| \${CTEST_CUSTOM_WARNING_EXCEPTION} | |
| # macOS Azure VM Warning | |
| "ld: warning: text-based stub file" | |
| # breathelink warning | |
| "WARNING: Duplicate C" | |
| ) | |
| set(dashboard_no_clean 1) | |
| set(ENV{CC} ${{ matrix.c-compiler }}) | |
| set(ENV{CXX} ${{ matrix.cxx-compiler }}) | |
| if(WIN32) | |
| set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}") | |
| endif() | |
| set(dashboard_cache " | |
| USE_GIT_PROTOCOL:BOOL=OFF | |
| BUILD_TESTING:BOOL=ON | |
| BUILD_DOCUMENTATION:BOOL=ON | |
| ") | |
| string(TIMESTAMP build_date "%Y-%m-%d") | |
| message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}") | |
| message("CTEST_SITE = \${CTEST_SITE}") | |
| include(\${CTEST_SCRIPT_DIRECTORY}/itkexamples_common.cmake) | |
| EOF | |
| cat dashboard.cmake | |
| - name: Build and test | |
| run: | | |
| ctest -j 2 -VV -S dashboard.cmake | |
| - name: Publish Documentation html as GitHub Artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Documentation | |
| path: | | |
| /home/runner/work/bld/ITKEx-build/ITKSphinxExamples-*-html.tar.gz | |
| /home/runner/work/bld/ITKEx-build/ITKSphinxExamples-*-html.zip | |
| - name: Unpack site | |
| shell: bash | |
| run: | | |
| mkdir ${{ github.workspace }}/site | |
| echo "Unpack to ${{ github.workspace }}/site" | |
| tar --strip-components=1 -xf /home/runner/work/bld/ITKEx-build/ITKSphinxExamples-*-html.tar.gz -C ${{ github.workspace }}/site | |
| - name: Deploy website to Netlify | |
| uses: nwtgck/[email protected] | |
| with: | |
| publish-dir: '${{ github.workspace }}/site' | |
| production-branch: master | |
| production-deploy: true | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| deploy-message: ${{ github.event.pull_request.title }}) | |
| enable-pull-request-comment: true | |
| enable-commit-comment: true | |
| overwrites-pull-request-comment: true | |
| env: | |
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }} | |
| timeout-minutes: 5 |