Fix neighbors calculation #518
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| # Skip CI if commit message contains `[ci skip]` in the subject | |
| init: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| skip: ${{ steps.ci-skip-step.outputs.ci-skip }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - id: ci-skip-step | |
| uses: mstachniuk/ci-skip@master | |
| # Check if pre-commit hooks pass and if README.rst can be converted to HTML | |
| linting: | |
| needs: init | |
| if: ${{ needs.init.outputs.skip == 'false' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Python 3.10 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pre-commit | |
| - name: Check pre-commit compatibility | |
| run: pre-commit run --all-files --show-diff-on-failure | |
| # Run unit tests | |
| test: | |
| needs: linting | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: pip install -e '.[dev]' | |
| - name: Unit tests | |
| timeout-minutes: 60 | |
| run: python -m pytest --durations=25 --ignore=tests/datasets/test_datasets.py --hypothesis-profile=ci --cov=scvelo -vv | |
| test-dataset-downloads: | |
| needs: test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Python 3.10 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| pip install -e . | |
| pip install hypothesis pytest pytest-cov | |
| - name: Test dataset downloads | |
| timeout-minutes: 60 | |
| run: python -m pytest tests/datasets/test_datasets.py -vv |