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Revamp survival analysis interface#842

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eroell merged 27 commits intomaintheislab/ehrapy:mainfrom enhancement/issue-840theislab/ehrapy:enhancement/issue-840Copy head branch name to clipboardJan 10, 2025

+281-45

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Commits on Dec 18, 2024

• cox_ph add all arguments

  aGuyLearning

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• updated test to use keywords

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• weibull_aft arguments update

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• log_logistic update

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• updated log logistic example

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Commits on Dec 20, 2024

• Merge branch 'main' into enhancement/issue-840

  Zethson

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Commits on Jan 8, 2025

• store summary df in adata.uns

  aGuyLearning

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• Merge branch 'main' into enhancement/issue-840

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• try moving np

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• omit inplace keyword

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• added explanation, as to where the results are stored

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• corrected spelling

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• updated tests to check for .uns ( should be removed later, when the univariates are updated )

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• fix argument order, doc fixes

  eroell

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• slightly simpler wording

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Commits on Jan 9, 2025

• fiexed spelling

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  Zethson

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• Update ehrapy/tools/_sa.py

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• Update ehrapy/tools/_sa.py

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• Update ehrapy/tools/_sa.py

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• Update ehrapy/tools/_sa.py

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• Update ehrapy/tools/_sa.py

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• Update ehrapy/tools/_sa.py

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Commits on Jan 10, 2025

• renamed function to be clearer

  aGuyLearning

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• Add uns_key parameter to Kaplan-Meier, Nelson-Aalen, and Weibull functions for customizable storage in AnnData object

  aGuyLearning

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• Update test assertions in TestSA for event_table handling and pass adata to assertion method

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• uns to in doc

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