v1.1

Added compatibility with genomes with the "chr" contig prefix. Fixed formatting issues with vcf to enable manipulations with bcftools.

v1.04

-fixed bug in plotting somatic variants on major allele
-pull contig names from bam header rather than assuming numerical order
-fix bug in running on only one contig
-compiled with matlab R2018a (use MCR/9.4)

v1.03

Fixed bugs introduced in enabling running on one chr in release v1.02. Fixed bug printing long indels.

v1.02

Update README.md

1.01

Minor updates to README and config templates

Initial release

1.0

Update README.md