Ruff Autofixes (tardis/analysis)

[atharva-2001]

📝 Description

Type: 🪲 bugfix | 🚀 feature | ☣️ breaking change | 🚦 testing | 📝 documentation | 🎢 infrastructure

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Also, link issues affected by this pull request by using the keywords: close, closes, closed, fix, fixes, fixed, resolve, resolves or resolved.

📌 Resources

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🚦 Testing

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☑️ Checklist

• I requested two reviewers for this pull request
• I updated the documentation according to my changes
• I built the documentation by applying the build_docs label

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[tardis-bot]

*beep* *bop*
Hi human,
I ran ruff on the latest commit (728269f).
Here are the outputs produced.
Results can also be downloaded as artifacts here.
Summarised output:

3	INP001	File `tardis/analysis/opacities.py` is part of an implicit namespace package. Add an `__init__.py`.
2	RET505	Unnecessary `elif` after `return` statement
1	E722  	Do not use bare `except`
1	F403  	`from tardis.grid.base import *` used; unable to detect undefined names

Complete output(might be large):

tardis/analysis/opacities.py:1:1: INP001 File `tardis/analysis/opacities.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/grid/__init__.py:7:1: F403 `from tardis.grid.base import *` used; unable to detect undefined names
tardis/grid/tests/test_grid.py:1:1: INP001 File `tardis/grid/tests/test_grid.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/radiation_field/base.py:1:1: INP001 File `tardis/radiation_field/base.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/util/base.py:341:5: RET505 Unnecessary `else` after `return` statement
tardis/util/base.py:515:5: E722 Do not use bare `except`
tardis/util/base.py:623:5: RET505 Unnecessary `elif` after `return` statement
Found 7 errors.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 70.81%. Comparing base (71aad19) to head (728269f).
Report is 1 commits behind head on master.

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #2826      +/-   ##
==========================================
- Coverage   70.98%   70.81%   -0.18%     
==========================================
  Files         209      209              
  Lines       15654    15648       -6     
==========================================
- Hits        11112    11081      -31     
- Misses       4542     4567      +25     

☔ View full report in Codecov by Sentry.
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[tardis-bot]

*beep* *bop*
Hi human,
I ran benchmarks as you asked comparing master (71aad19) and the latest commit (728269f).
Here are the logs produced by ASV.
Results can also be downloaded as artifacts here.

Significantly changed benchmarks:

All benchmarks:

Benchmarks that have stayed the same:

| Change   | Before [71aad198] <master>   | After [728269f2]    | Ratio   | Benchmark (Parameter)                                                                                                               |
|----------|------------------------------|---------------------|---------|-------------------------------------------------------------------------------------------------------------------------------------|
|          | 2.84±0.5μs                   | 3.81±0.4μs          | ~1.34   | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_bad_vpacket                                       |
|          | 6.73±0.7μs                   | 7.65±0.9μs          | ~1.14   | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket                                           |
|          | 1.51±0.4μs                   | 1.68±0.4μs          | ~1.11   | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_line                    |
|          | 3.69±0.6μs                   | 3.18±0.5μs          | ~0.86   | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_within_shell                              |
|          | 2.61±2μs                     | 2.20±1μs            | ~0.84   | transport_montecarlo_estimators_radfield_estimator_calcs.BenchmarkMontecarloMontecarloNumbaPacket.time_update_line_estimators       |
|          | 50.2±30μs                    | 42.0±20μs           | ~0.84   | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_emission                                         |
|          | 29.0±8μs                     | 22.1±5μs            | ~0.76   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list |
|          | 4.15±0.01ms                  | 2.79±0.01ms         | ~0.67   | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('scatter')                                     |
|          | 208±0.04ns                   | 220±0.06ns          | 1.06    | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_intensity_black_body                                       |
|          | 724±0.6ns                    | 765±0.5ns           | 1.06    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_thomson_scatter                                       |
|          | 1.66±0.02ms                  | 1.72±0.01ms         | 1.03    | transport_montecarlo_main_loop.BenchmarkTransportMontecarloMontecarloMainLoop.time_montecarlo_main_loop                             |
|          | 4.08±0.03ms                  | 4.15±0.03ms         | 1.02    | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('macroatom')                                   |
|          | 7.50±2μs                     | 7.60±2μs            | 1.01    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_volley                                    |
|          | 591±200ns                    | 591±200ns           | 1.00    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation                              |
|          | 2.09±0m                      | 2.09±0m             | 1.00    | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_FormalIntegrator_functions                                 |
|          | 1.19±0μs                     | 1.19±0μs            | 1.00    | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_boundary                |
|          | 2.66±0.4ms                   | 2.65±0.4ms          | 0.99    | transport_montecarlo_single_packet_loop.BenchmarkTransportMontecarloSinglePacketLoop.time_single_packet_loop                        |
|          | 1.06±0m                      | 1.03±0m             | 0.97    | run_tardis.BenchmarkRunTardis.time_run_tardis_rpacket_tracking                                                                      |
|          | 32.5±0.1μs                   | 31.6±0μs            | 0.97    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list                  |
|          | 66.5±0.1ms                   | 64.3±0.5ms          | 0.97    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_rpacket_trackers_to_dataframe                  |
|          | 521±100ns                    | 501±200ns           | 0.96    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation                                      |
|          | 39.0±0.1s                    | 37.5±0.06s          | 0.96    | run_tardis.BenchmarkRunTardis.time_run_tardis                                                                                       |
|          | 552±100ns                    | 521±100ns           | 0.94    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation                                |
|          | 48.1±40μs                    | 44.7±30μs           | 0.93    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_scatter                                          |

If you want to see the graph of the results, you can check it here