Fix documentation build (#1392)

* pin sphinx-bibtex * add channels param * fix download link and clear outputs * fix broken softlinks
tardis-sn · Dec 16, 2020 · 23ac153 · 23ac153
1 parent 0c09399
commit 23ac153
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diff --git a/.github/workflows/documentation-build.yml b/.github/workflows/documentation-build.yml
@@ -21,6 +21,7 @@ jobs:
         with:
             environment-file: tardis_env3.yml
             activate-environment: tardis
+            channels: conda-forge
             mamba-version: "*"
 
       - name: Install TARDIS

diff --git a/docs/quickstart/quickstart.ipynb b/docs/quickstart/quickstart.ipynb
diff --git a/docs/using/components/configuration/schemas b/docs/using/components/configuration/schemas
@@ -0,0 +1 @@
+../../../../tardis/io/schemas
diff --git a/docs/using/components/configuration/schemas/base.yml b/docs/using/components/configuration/schemas/base.yml
diff --git a/docs/using/components/configuration/schemas/model.yml b/docs/using/components/configuration/schemas/model.yml
diff --git a/docs/using/components/configuration/schemas/montecarlo.yml b/docs/using/components/configuration/schemas/montecarlo.yml
diff --git a/docs/using/components/configuration/schemas/plasma.yml b/docs/using/components/configuration/schemas/plasma.yml
diff --git a/docs/using/components/configuration/schemas/spectrum.yml b/docs/using/components/configuration/schemas/spectrum.yml
diff --git a/docs/using/components/configuration/schemas/supernova.yml b/docs/using/components/configuration/schemas/supernova.yml
diff --git a/docs/using/components/models/examples/abund.dat b/docs/using/components/models/examples/abund.dat
@@ -1 +1 @@
-../../../tardis/io/tests/data/abund.dat
+../../../../../tardis/io/tests/data/abund.dat
diff --git a/docs/using/components/models/examples/density.dat b/docs/using/components/models/examples/density.dat
@@ -1 +1 @@
-../../../tardis/io/tests/data/density.dat
+../../../../../tardis/io/tests/data/density.dat
diff --git a/docs/using/interaction/custom_source.ipynb b/docs/using/interaction/custom_source.ipynb
@@ -170,4 +170,4 @@
  },
  "nbformat": 4,
  "nbformat_minor": 2
-}
+}
diff --git a/docs/using/interaction/old_gui.rst b/docs/using/interaction/old_gui.rst
@@ -39,7 +39,7 @@ To use PySide2:
 
 **3**. An example of creating a model and GUI
 
-First, get the example file `tardis_example.yml <https://raw.githubusercontent.com/tardis-sn/tardis/master/docs/models/examples/tardis_example.yml>`_.
+First, get the example file `tardis_example.yml <https://raw.githubusercontent.com/tardis-sn/tardis/master/docs/using/components/models/examples/tardis_example.yml>`_.
 
 To download a copy of the atomic database (if you haven't already), add:
 

diff --git a/docs/using/interaction/physical_quantities.ipynb b/docs/using/interaction/physical_quantities.ipynb
diff --git a/docs/using/interaction/tardis_example.yml b/docs/using/interaction/tardis_example.yml
@@ -1 +1 @@
-../tardis_example.yml
+../../../docs/using/components/models/examples/tardis_example.yml
diff --git a/docs/using/tardis_example.yml b/docs/using/tardis_example.yml
@@ -1 +1 @@
-../models/examples/tardis_example.yml
+../using/components/models/examples/tardis_example.yml
diff --git a/tardis_env3.yml b/tardis_env3.yml
@@ -51,7 +51,7 @@ dependencies:
   - nbformat
   - nbsphinx
   - sphinx_bootstrap_theme
-  - sphinxcontrib-bibtex
+  - sphinxcontrib-bibtex=1.0
   - sphinxcontrib-apidoc
   - sphinx_rtd_theme
   - recommonmark