Cache LFS Objects in the TARDIS-Carsus Compatibility Check Workflow (#…

…327)

* Initial commit

change env file path

change env file path

change path again

change path again

skip first step

path again

Package path

* Add step to download the CMFGEN database

* Add URLs to the CMFGEN database

Fix atom data path

* Add tardis build job

repo path

test

* Add strategy for TARDIS build job

* Fix lock file path

 Fix package path

* Add step to run notebook

* Upload spectrum notebook

Fix notebook path

Fix notebook path

Require carsus build to run again before running tardis build

* Fix atom data path

Fix output format of atom data notebook

Fix atom data path again

Print atom data path

Fix atom data path

* Change URL used to get the reference data file

* Download the file from the workflow

* Upload reference data as artifact

* Try downloading all reference data

* Clone my fork of tardis refdata

* Use lfs when cloning

* Separate commands

* Add new env variables, generate reference data for comparision using the new atomic data file

* Clone my fork with arraydiff unpinned

Fix atomic data path

* Fix notebook path when creating artifact

* Fix paths in environment variables

* Install bokeh

* Fix paths after moving branch

* Rename notebook

* Remove variables related to matrix strategy

* Remove step to download reference data

* Create copy of the quickstart notebook

* Delete markdown

* Add refdata_gen notebook instead of quickstart

* Change branch when cloning carsus in the workflow

* Try removing chianti reader

* Put back elements in the atomic data

* Add chianti data back but without collisions

* Change Chianti version

* Continue workflow if step fails

* Revert back Chianti version

* Add step to fail job if spectra dont match

* test

* Exit if contents of tmp file are set to 0

* Exit code

* revert comments

* On workflow dispatch

* Rename steps and use variables

* Replace NBCONVERT_CMD variable with NBCONVERT_FLAGS

* Comment out Carsus build job temporarily, download reference data from ci helpers

* Disable workflow dispatch temporarily

* Fix paths for refdata compare notebook

* Carsus build is necessary for TARDIS build

* Change file name in notebook

* Delete lines commented out which are not necessary

* Do not clone my fork of the carsus repository

* Change title of the notebook and rename it

* Change file and step names

* No need for inputs

* Check file contents according to changes in tardis-sn/tardis-refdata#58

* Change path of refdata_compare_result file

* Change trigger back to workflow_dispatch

* Update URL to use TARDIS fork

* Do not pin bokeh

* Add name to comparison notebook artifact

* Cache LFS objects

* Do git lfs checkout if the cache key is found

* Use cache no instead of v1 hardcoding

.github/workflows/bridge.yml

@@ -91,8 +91,32 @@ jobs:
       - name: Download refdata_compare notebook
         run: wget https://raw.githubusercontent.com/tardis-sn/tardis-refdata/master/notebooks/ref_data_compare_from_paths.ipynb
 
-      - name: Download reference data
-        run: bash .ci-helpers/download_reference_data.sh
+      - name: Clone tardis-sn/tardis-refdata
+        uses: actions/checkout@v2
+        with:
+          repository: tardis-sn/tardis-refdata
+          path: tardis-refdata
+
+      - name: Create LFS file list
+        run: git lfs ls-files -l | cut -d' ' -f1 | sort > .lfs-assets-id
+        working-directory: tardis-refdata
+
+      - name: Restore LFS cache
+        uses: actions/cache@v2
+        id: lfs-cache
+        with:
+          path: tardis-refdata/.git/lfs
+          key: ${{ runner.os }}-lfs-${{ hashFiles('tardis-refdata/.lfs-assets-id') }}-v${{ env.CACHE_NUMBER }}
+
+      - name: Git LFS Pull
+        run: git lfs pull
+        working-directory: tardis-refdata
+        if: steps.lfs-cache.outputs.cache-hit != 'true'
+
+      - name: Git LFS Checkout
+        run: git lfs checkout
+        working-directory: tardis-refdata
+        if: steps.lfs-cache.outputs.cache-hit == 'true'
 
       - name: Setup TARDIS environment
         uses: conda-incubator/setup-miniconda@v2