Sample data (ps) is not running

[Yichel518]

Hello! I met a trouble when I run

data(ps)
result = network(ps = ps,N = 0.001,r.threshold=0.6,p.threshold=0.05,label = FALSE,path = path ,zipi = TRUE)
Error in validObject(.Object) : invalid class “otu_table” object:
OTU abundance data must have non-zero dimensions."
And then using my own data the same error occurs, and after I have replaced the relative abundance with a count file, the structure of my object looks like this
data
phyloseq-class experiment-level object
otu_table() OTU Table: [ 17 taxa and 38 samples ]
sample_data() Sample Data: [ 38 samples by 4 sample variables ]
tax_table() Taxonomy Table: [ 17 taxa by 7 taxonomic ranks ]
phy_tree() Phylogenetic Tree: [ 17 tips and 16 internal nodes ]

what is wrong with my codes?

[xph007]

Thank you for your support "ggClusterNet". The error was caused by the wrong parameter "N = 0.001".  "N=integer", it meas extract  the top N number relative abundance of OTU.

…

------------------ 原始邮件 ------------------ 发件人: "taowenmicro/ggClusterNet" ***@***.***>; 发送时间: 2022年3月12日(星期六) 晚上11:31 ***@***.***>; ***@***.***>; 主题: [taowenmicro/ggClusterNet] Sample data (ps) is not running (Issue #2) Hello! I met a trouble when I run data(ps) result = network(ps = ps,N = 0.001,r.threshold=0.6,p.threshold=0.05,label = FALSE,path = path ,zipi = TRUE) Error in validObject(.Object) : invalid class “otu_table” object: OTU abundance data must have non-zero dimensions." And then using my own data the same error occurs, and after I have replaced the relative abundance with a count file, the structure of my object looks like this data phyloseq-class experiment-level object otu_table() OTU Table: [ 17 taxa and 38 samples ] sample_data() Sample Data: [ 38 samples by 4 sample variables ] tax_table() Taxonomy Table: [ 17 taxa by 7 taxonomic ranks ] phy_tree() Phylogenetic Tree: [ 17 tips and 16 internal nodes ] what is wrong with my codes? — Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[taowenmicro]

文档：ggClusterNet-保姆级教程.md
链接：http://note.youdao.com/noteshare?id=c8c1e6f906470a3765f3cf514b204679