update __init__.py (#717) #1178
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.8", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install BEDTools (Linux) | |
| run: sudo apt-get install bedtools libmagickwand-dev | |
| if: matrix.os == 'ubuntu-latest' | |
| - name: Install BEDTools (macOS) | |
| run: brew install bedtools imagemagick | |
| if: matrix.os == 'macos-latest' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e . | |
| - name: Test with pytest | |
| run: | | |
| pip install PyYAML pytest pytest-cov pytest-benchmark mock | |
| pytest --cov=jcvi tests |