Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Added RGB example from core #128

Merged
merged 2 commits into from
Feb 28, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions changelog/128.doc.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
Added a tutorial (:ref:`sphx_glr_generated_gallery_rgb_composite.py`) demonstrating how to create an RGB image with three different maps.
63 changes: 63 additions & 0 deletions examples/rgb_composite.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,63 @@
"""
=============================
Making an RGB composite image
=============================

This example shows the process required to create an RGB composite image
of three AIA images at different wavelengths. To read more about the
algorithm used in this example, see this
`Astropy tutorial <https://docs.astropy.org/en/stable/visualization/rgb.html>`__.
"""
import matplotlib.pyplot as plt
from matplotlib.lines import Line2D

import sunpy.data.sample
from astropy.visualization import make_lupton_rgb
from sunpy.map import Map

from sunkit_image.enhance import mgn

###############################################################################
# We will use three AIA images from the sample data at the following
# wavelengths: 171, 193, and 211 Angstroms. The 171 image shows the quiet
# solar corona, 193 shows a hotter region of the corona, and 211 shows
# active magnetic regions in the corona.

maps = Map(sunpy.data.sample.AIA_171_IMAGE, sunpy.data.sample.AIA_193_IMAGE, sunpy.data.sample.AIA_211_IMAGE)

###############################################################################
# Before the images are assigned colors and combined, they need to be
# normalized so that features in each wavelength are visible in the combined
# image. We will apply multi-scale Gaussian normalization using
# `sunkit_image.enhance.mgn` to each map and then create the rgb composite.
# The ``k`` parameter is a scaling factor applied to the normalized image. A
# value of 5 produces sharper details in the transformed image. In the
# `~astropy.visualization.make_lupton_rgb` function, ``Q`` is a softening
# parameter which we set to 0 and ``stretch`` controls the linear stretch
# applied to the combined image.

maps_mgn = [Map(mgn(m.data, k=5), m.meta) for m in maps]
im_rgb = make_lupton_rgb(maps_mgn[0].data, maps_mgn[1].data, maps_mgn[2].data, Q=0, stretch=1)

###############################################################################
# The output of the `astropy.visualization.make_lupton_rgb` algorithm is not
# a Map, but instead an image. So, we need to create a WCS Axes using one of
# original maps and manually set the label. In the first step below, we grab
# the Set1 qualitative colormap to apply to the custom legend lines.

cmap = plt.cm.Set1
custom_lines = [
Line2D([0], [0], color=cmap(0), lw=4),
Line2D([0], [0], color=cmap(2), lw=4),
Line2D([0], [0], color=cmap(1), lw=4),
]
fig = plt.figure()
ax = fig.add_subplot(111, projection=maps[0].wcs)
im = ax.imshow(im_rgb)
lon, lat = ax.coords
lon.set_axislabel("Helioprojective Longitude")
lat.set_axislabel("Helioprojective Latitude")
ax.legend(custom_lines, ["AIA 171", "AIA 193", "AIA 211"])
ax.set_title("AIA RGB Composite")

plt.show()