Calculate relative abundance of scaffolds based on NanoARG 'Full Table' output. Find associations between antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs). Find stretches of DNA with contiguous ARGs and MGEs.
Assembly file format:
scaffold_0 length_709020 read_count_97243 CTTTGGTGGCAACCGTGGCGGCTTTGGCGATCGCCCACGTCGTTTCAACGACTACGATGGTGAGTAATCACTAAGTAATTAGACTACAAAAGAGGCCCGGGTGTATTCCCGGGCCTCTTTTATTTTGTCACTACCACAAATGTTATTCTTCTAACATTTATACCCCTAATGATGAGACTACAGAATAAAAGTCTACCTTATCTACTTGATCACATTTTACAAAAATACAGCCCCTGATATCCTGCATCCATCAAATCACTATAGCCAAGGAATTTTATGCTTTTCATAAAAAAGTCTATCGGTTGCTTTTTTGTTATAGGAAGCCTCTATCTGTATGCATATACAGCTGCACGCCATGATGAGCTCAGCTTTCCCAAAAGCTTTCTTTGGGGTGCTGCAGGAGCTGAGTTTCAAGATTCAGGCGCACATTATGCACCTGGTAAAACAGCTTTAAGTAATTGGTATGATTGGGAGCGAACACAGCATGCTGATGGAAGACCTCATATTGATGGTGGCGCACAATCTGGATCTGGAAATCAGCACTGGACAAAAACAAATGAAGATATCGCCCTCATGAAAGAGCTTGGCCTGACAAGCTACAGATTTTCAGTTGATTGGAGCAGTATTGAACCAGAGCAAGGGACACTTGATGTTGATGCACTAGAACATTACCAAGATTTCTGTCGGGCACTTGTTGAAGCCGGCATAAAGCCAATGATTACACTCCACCACTTTGTTCATCCTCTTTGGTTTGAGAAGCTCGGCGCATTTGAAAAACATTGTAACATTGCTTATTTTGTTAACTTCAGCGTGAAGATG............