Do not crash if spline is requested with only 1 control point - this … #9
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| name: Coot CI Ubuntu | |
| on: | |
| push: | |
| workflow_dispatch: | |
| jobs: | |
| build-ubuntu: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: wget test data | |
| run: wget -nv https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/data/greg-data.tar.gz | |
| - name: Untar test data | |
| run: cd src && tar xf ../greg-data.tar.gz && cd - | |
| - name: cache test data | |
| id: cache-coot-test-data | |
| uses: actions/cache@v4 | |
| with: | |
| path: src/greg-data | |
| key: coot-test-data | |
| - name: Cache coot dependencies | |
| id: cache-coot-dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/install/coot-Linux-ubuntu-gtk4 | |
| key: coot-deps-ubuntu | |
| - name: Cache gemmi source | |
| id: Cache-gemmi-source | |
| uses: actions/cache@v4 | |
| with: | |
| path: gemmi | |
| key: coot-build-ubuntu-gemmi-cache-source | |
| - name: Cache gemmi build | |
| id: Cache-gemmi-build | |
| uses: actions/cache@v4 | |
| with: | |
| path: build-gemmi | |
| key: coot-build-ubuntu-gemmi-cache-build | |
| - name: List any installed Coot libs | |
| run: ls -l /home/runner/install/coot-Linux-ubuntu-gtk4/lib/libcoot* /home/runner/install/coot-Linux-ubuntu-gtk4/lib/libMoleculesToTrianglesCXXClasses* | |
| - name: Delete any installed Coot libs | |
| run: rm /home/runner/install/coot-Linux-ubuntu-gtk4/lib/libcoot* /home/runner/install/coot-Linux-ubuntu-gtk4/lib/libMoleculesToTrianglesCXXClasses* | |
| - name: download the monomer library | |
| run: wget -nv https://github.com/MonomerLibrary/monomers/archive/refs/tags/ccp4-8.0.016.tar.gz | |
| # note that the data directory exists in the coot repo (which is where we are) | |
| - name: untar the monomer library | |
| run: pwd && cd data && tar xf ../ccp4-8.0.016.tar.gz && ln -s monomers-ccp4-8.0.016 monomers | |
| - name: Update apt-get | |
| run: sudo apt-get update | |
| - name: Install system dependencies | |
| run: sudo apt-get install cmake libdw-dev libncurses5-dev libgtk-4-dev libvorbis-dev libasound2-dev | |
| - name: Where are we? | |
| run: pwd | |
| - name: Run build-with-build-it-3-3 | |
| run: bash build-it-3-3 || echo done | |
| - name: Run autogen.sh | |
| run: bash autogen.sh | |
| - name: Set the PATH | |
| # the install dir is set specifically in build-it-3-3 when we in github actions | |
| run: echo /home/runner/install/coot-Linux-ubuntu-gtk4/bin >> $GITHUB_PATH | |
| - name: Run configure | |
| # we echo done so that this returns a success status so that the logs are always uploaded | |
| run: > | |
| ./configure --prefix=/home/runner/install/coot-Linux-ubuntu-gtk4 | |
| --enable-silent-rules | |
| --with-enhanced-ligand-tools | |
| --with-fftw-prefix=/home/runner/install/coot-Linux-ubuntu-gtk4 | |
| --with-boost=/home/runner/install/coot-Linux-ubuntu-gtk4 | |
| --with-gemmi=/home/runner/install/coot-Linux-ubuntu-gtk4 | |
| --with-boost-libdir=/home/runner/install/coot-Linux-ubuntu-gtk4/lib | |
| --with-backward --with-libdw --with-sound --disable-static | |
| SHELL=/bin/bash | |
| PYTHON=/home/runner/install/coot-Linux-ubuntu-gtk4/bin/python3 | |
| PKG_CONFIG_PATH=/home/runner/install/coot-Linux-ubuntu-gtk4/lib64/pkgconfig:/home/runner/install/coot-Linux-ubuntu-gtk4/lib/pkgconfig:/home/runner/install/coot-Linux-ubuntu-gtk4/lib/x86_64-linux-gnu/pkgconfig | |
| || echo done | |
| - name: Compile with make | |
| run: make -j 4 || echo done | |
| - name: Install with make install | |
| run: make install || echo done | |
| - name: Upload config.log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: upload-config-log-package | |
| path: ./config.log | |
| retention-days: 3 | |
| - name: Upload build logs | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: build-logs-public-html-package | |
| path: /home/runner/public_html | |
| retention-days: 3 | |
| - name: Does it run? | |
| env: | |
| COOT_REFMAC_LIB_DIR: /home/runner/work/coot/coot # "data/monomers" is added before "a/ATP.cif" (say) | |
| run: cd src && ./Coot --no-graphics < /dev/null && cd - | |
| - name: Run the Unit Python Tests | |
| env: | |
| COOT_REFMAC_LIB_DIR: /home/runner/work/coot/coot | |
| COOT_TEST_DATA_DIR: ../src/greg-data | |
| run: cd python-tests && ../src/Coot --no-graphics --script run_the_unit_tests.py && cd - | |
| - name: Upload binaries | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ubuntu-binaries-package | |
| path: /home/runner/install | |
| retention-days: 3 | |