Do not crash if spline is requested with only 1 control point - this … #5
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| name: libcootapi CI build-it-3-3 macOS | |
| on: | |
| push: | |
| jobs: | |
| build-libcootapi-for-macos-build-it-3-3-based: | |
| runs-on: macos-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: cache macos autobuild-sources | |
| id: cache-macos-autobuild-sources | |
| uses: actions/cache@v4 | |
| with: | |
| path: /Users/runner/autobuild/building/sources | |
| key: macos-files-in-autobuild-sources | |
| # we need gfortran for numpy. Homebrew is the way to install gfortran | |
| - name: Setup homebrew | |
| id: setup-homebrew | |
| uses: Homebrew/actions/setup-homebrew@master | |
| - name: turn on brew analytics | |
| run: brew analytics on | |
| - name: Install gfortran | |
| run: brew install gfortran | |
| # does this install gfortran then? | |
| # - name: brew reinstall gcc | |
| # run: brew reinstall gcc | |
| # no, it doesn't - it fails on some Python error and breask the build. | |
| # Annoying. | |
| - uses: actions/checkout@v4 | |
| - name: cache macos install-dir | |
| id: cache-macos-install-dir | |
| uses: actions/cache@v4 | |
| with: | |
| path: /Users/runner/install | |
| key: macos-files-in-install-dir | |
| - name: download the monomer library | |
| run: wget -nv https://github.com/MonomerLibrary/monomers/archive/refs/tags/ccp4-8.0.016.tar.gz | |
| # note that the data directory exists in the coot repo (which is where we are) | |
| - name: untar the monomer library | |
| run: pwd && cd data && tar xf ../ccp4-8.0.016.tar.gz && ln -s monomers-ccp4-8.0.016 monomers | |
| - name: Cache test data tar | |
| id: macos-libcootapi-test-data-cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: test-molecule-container-test-data.tar.gz | |
| key: macos-libcootapi-test-data-cache | |
| - name: download test data | |
| run: wget -N -nv https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/data/test-molecule-container-test-data.tar.gz | |
| - name: untar test data | |
| run: mkdir test-data && cd test-data && tar xvf ../test-molecule-container-test-data.tar.gz | |
| - name: Cache macos gemmi source | |
| id: Cache-libcootapi-macos-gemmi-source | |
| uses: actions/cache@v4 | |
| with: | |
| path: gemmi | |
| key: build-macos-libcootapi-build-it-3-3-based-gemmi-cache-source | |
| - name: Cache macos gemmi build | |
| id: Cache-libcootapi-macos-gemmi-build | |
| uses: actions/cache@v4 | |
| with: | |
| path: build-gemmi | |
| key: build-macos-libcootapi-build-it-3-3-based-gemmi-cache-build | |
| # Home on macOS is /Users/runner, we start in /Users/runner/work/coot/coot | |
| - name: where are we? | |
| run: pwd | |
| # without a cache, these fail | |
| # - name: what includes have been built/cached || true | |
| # run: ls -l /Users/runner/install/chapi-Darwin-macos-gtk4/include | |
| # - name: what libs have been built/cached || true | |
| # run: ls -l /Users/runner/install/chapi-Darwin-macos-gtk4/lib | |
| - name: run build-it-3-3 in chapi mode | |
| env: | |
| CHAPI_ONLY: true | |
| run: bash build-it-3-3 | |
| - name: Upload build logs | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: build-logs-public-html-package | |
| path: /Users/runner/public_html | |
| retention-days: 3 | |
| - name: create-build-directory-for-libcootapi | |
| run: mkdir build-libcootapi | |
| - name: patch out CCP4-package in CMakeLists.txt | |
| run: sed -i.backup -e 's/find_package.CCP4/#&/' CMakeLists.txt | |
| # CHAPI_ONLY installs Python version 3.10 | |
| # don't use RDKit ATM: | |
| # -DRDKit_DIR=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/cmake/rdkit | |
| - name: run cmake | |
| run: > | |
| cd build-libcootapi && | |
| cmake -DCMAKE_INSTALL_PREFIX=/Users/runner/install/chapi-Darwin-macos-gtk4 | |
| -DGEMMI_DIR=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/cmake/gemmi | |
| -DSSM_INCLUDE_DIR=/Users/runner/install/chapi-Darwin-macos-gtk4/include | |
| -DCLIPPER-CORE_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/libclipper-core.dylib | |
| -DCLIPPER-MMDB_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/libclipper-mmdb.dylib | |
| -DCLIPPER-CCP4_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/libclipper-ccp4.dylib | |
| -DCLIPPER-CONTRIB_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/libclipper-contrib.dylib | |
| -DCLIPPER-MINIMOL_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/libclipper-minimol.dylib | |
| -DCLIPPER-CIF_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/libclipper-cif.dylib | |
| -DCLIPPER-CORE_INCLUDE_DIR=/Users/runner/install/chapi-Darwin-macos-gtk4/include | |
| -DCLIPPER-MMDB_INCLUDE_DIR=/Users/runner/install/chapi-Darwin-macos-gtk4/include | |
| -DCLIPPER-CCP4_INCLUDE_DIR=/Users/runner/install/chapi-Darwin-macos-gtk4/include | |
| -DFFTW2_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/libfftw.dylib | |
| -DRFFTW2_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/librfftw.dylib | |
| -DMMDB2_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/libmmdb2.dylib | |
| -DMMDB2_INCLUDE_DIR=/Users/runner/install/chapi-Darwin-macos-gtk4/include | |
| -DSSM_LIBRARY=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/libssm.dylib | |
| -DPython_EXECUTABLE=/Users/runner/install/chapi-Darwin-macos-gtk4/bin/python3.10 | |
| -DPython_INCLUDE_DIR=/Users/runner/install/chapi-Darwin-macos-gtk4/include/python3.10 | |
| -Dnanobind_DIR=/Users/runner/install/chapi-Darwin-macos-gtk4/lib/python3.10/site-packages/nanobind/cmake .. | |
| - name: Upload CMakeCache.txt | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: cmake-cache-package | |
| path: /Users/runner/work/coot/coot/build-libcootapi | |
| retention-days: 3 | |
| - name: make | |
| run: cd build-libcootapi && make -j 4 | |
| - name: make install | |
| run: cd build-libcootapi && make install | |
| - name: run the test-molecules-container test | |
| # this needs the monomer library | |
| env: | |
| MOORHEN_TEST_DATA_DIR: ../test-data | |
| COOT_REFMAC_LIB_DIR: /Users/runner/work/coot/coot # "data/monomers" is added before "a/ATP.cif" (say) | |
| run: cd build-libcootapi && ./test-molecules-container | egrep "^FAIL|^PASS|^UN|^LIGHTS|^, " | |
| - name: Upload binaries | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: macos-build-it-3-3-libcootapi-chapi-binaries-package | |
| path: /Users/runner/install | |
| retention-days: 3 |