Fix recent merge conflict #1
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| name: Coot CI Homebrew macOS | |
| on: | |
| push: | |
| jobs: | |
| build-for-macos: | |
| runs-on: macos-latest | |
| steps: | |
| # I don't want to a cache Homebrew after coot has been installed | |
| # - name: Cache homebrew | |
| # id: cache-homebrew | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: /usr/local | |
| # key: usr_local_homebrew | |
| - name: download test data | |
| run: wget https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/data/test-molecule-container-test-data.tar.gz | |
| - name: untar test data | |
| run: tar xvf test-molecule-container-test-data.tar.gz | |
| - name: Which brew? | |
| run: which brew | |
| - name: Setup homebrew | |
| id: setup-homebrew | |
| uses: Homebrew/actions/setup-homebrew@master | |
| - name: turn on brew analytics | |
| run: brew analytics on | |
| # from https://support.circleci.com/hc/en-us/articles/360043542933--Error-The-brew-link-step-did-not-complete-successfully-When-Installing-Python | |
| # - name: brew unlink python@2 | |
| # run: brew unlink python@2 | |
| # -> didn't work: Error: No such keg: /usr/local/Cellar/python@2 | |
| # this is not needed, it seems already installed? | |
| # this is causing a conflict with azure-cli? | |
| # I actually don't care which version of python is used at the moment. | |
| # - name: Homebrew install python3 | |
| # run: brew install [email protected] | |
| - name: pre-update clean for homebrew | |
| run: | | |
| rm '/usr/local/bin/2to3' | |
| rm '/usr/local/bin/2to3-3.11' | |
| rm '/usr/local/bin/2to3-3.12' | |
| rm '/usr/local/bin/idle3' | |
| rm '/usr/local/bin/idle3.11' | |
| rm '/usr/local/bin/idle3.12' | |
| rm '/usr/local/bin/pydoc3.12' | |
| rm '/usr/local/bin/python3.12' | |
| rm '/usr/local/bin/python3.12-config' | |
| rm '/usr/local/bin/pydoc3' | |
| rm '/usr/local/bin/pydoc3.11' | |
| rm '/usr/local/bin/python3' | |
| rm '/usr/local/bin/python3-config' | |
| rm '/usr/local/bin/python3.11-config' | |
| rm '/usr/local/bin/python3.11' | |
| - name: brew update | |
| run: | | |
| brew update | |
| brew upgrade | |
| - name: Install Homebrew dependencies | |
| run: > | |
| brew install boost boost-python3 brewsci/bio/clipper4coot | |
| brewsci/bio/raster3d brewsci/bio/ssm brewsci/bio/gemmi | |
| dwarfutils gsl rdkit pygobject3 | |
| - name: Get coot.rb file | |
| # run: wget https://raw.githubusercontent.com/YoshitakaMo/homebrew-bio/coot/Formula/coot.rb | |
| # try this modified version for now: | |
| run: wget https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/coot.rb | |
| - name: Compile Homebrew coot HEAD | |
| # don't stall waiting for user input to resolve the failed patch | |
| run: NONINTERACTIVE=1 brew install ./coot.rb --HEAD | |
| - name: Does it run? | |
| run: coot --no-graphics < /dev/null | |