release: bumps version to v0.3.0

CHANGELOG.md

@@ -1,5 +1,47 @@
 # Changelog
 
+## 0.3.0 — 10-10-2022
+
+### Added
+
+* `ngs qc`: adds coverage and edits quality check in a second pass.
+* `ngs qc`: adds mate mismatched sequence id and CIGAR accumulation to the
+  General quality control facet.
+* Adds reference genome support for `GRCh38_no_alt_AnalysisSet`, `hs37d5`,
+  `hg38m1x`, and `T2T-CHM13`.
+* `ngs list`: adds `ngs list` command to list out particular subjects that are
+  supported by the `ngs` command line tool.
+* `ngs plot`: adds `ngs plot` command to visualize the output of data from `ngs
+  qc`. In the initial sample-level implementation, we support graphs for GC
+  Content Distribution & Quality Score Distribution. In the initial cohort-level
+  implementation, we just support GC Content Distribution.
+* `ngs index`: adds `ngs index command to index common bioinformatics formats.
+
+### Revised
+
+* `ngs qc`: all results are aggregated into a single file now.
+* `ngs generate`: now supports better read names (the location where read one
+  originated from is now in the read name).
+* Unifies command line arguments for number of records (`-n`).
+
+### Fixed
+
+* `ngs generate`: fixed off by one error when generating records (one too many
+  records was being generated).
+
+
+### Major Chores
+
+* Minimum supported Rust version is now 1.64.0.
+* Updates license to be either MIT or Apache 2.0 licensed (at the user's
+  discretion).
+* Updates dependencies as of 09/29/2022.
+* Adds lint groups for documentation, Rust 2021 compatability, and Rust 2018
+  idioms. This caused a few changes in the code, as well as a massive
+  improvement in documentation.
+* The code was reorganized by subcommand (in terms of file system structure).
+
+
 ## 0.2.0 — 09-18-2022
 
 ### Added

Cargo.toml

@@ -5,7 +5,7 @@ license = "MIT"
 name = "ngs"
 publish = true
 description = "Command line tool for processing next-generation sequencing data."
-version = "0.2.0"
+version = "0.3.0"
 
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html