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add merqury and meryl modules to json with nf-core tools genomeqc/nf-…
…core#42 genomeqc/nf-core#58
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,142 +1,116 @@ | ||
| { | ||
| "name": "ecoflow/genomeqc", | ||
| "homePage": "https://github.com/ecoflow/genomeqc", | ||
| "repos": { | ||
| "https://github.com/nf-core/modules.git": { | ||
| "modules": { | ||
| "nf-core": { | ||
| "agat/spstatistics": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "modules" | ||
| ] | ||
| }, | ||
| "busco/busco": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "modules" | ||
| ] | ||
| }, | ||
| "fastqc": { | ||
| "branch": "master", | ||
| "git_sha": "285a50500f9e02578d90b3ce6382ea3c30216acd", | ||
| "installed_by": [ | ||
| "modules" | ||
| ] | ||
| }, | ||
| "gffread": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "modules" | ||
| ] | ||
| }, | ||
| "multiqc": { | ||
| "branch": "master", | ||
| "git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a", | ||
| "installed_by": [ | ||
| "modules" | ||
| ] | ||
| }, | ||
| "ncbigenomedownload": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "modules" | ||
| ] | ||
| }, | ||
| "orthofinder": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "modules" | ||
| ] | ||
| }, | ||
| "pigz/uncompress": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "modules" | ||
| ] | ||
| }, | ||
| "quast": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "modules" | ||
| ] | ||
| }, | ||
| "seqkit/seq": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "fasta_explore_search_plot_tidk" | ||
| ] | ||
| }, | ||
| "seqkit/sort": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "fasta_explore_search_plot_tidk" | ||
| ] | ||
| }, | ||
| "tidk/explore": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "fasta_explore_search_plot_tidk" | ||
| ] | ||
| }, | ||
| "tidk/plot": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "fasta_explore_search_plot_tidk" | ||
| ] | ||
| }, | ||
| "tidk/search": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": [ | ||
| "fasta_explore_search_plot_tidk" | ||
| ] | ||
| } | ||
| } | ||
| }, | ||
| "subworkflows": { | ||
| "nf-core": { | ||
| "fasta_explore_search_plot_tidk": { | ||
| "branch": "master", | ||
| "git_sha": "ab80a04707104a4baf39341581dfbced5da05479", | ||
| "installed_by": [ | ||
| "subworkflows" | ||
| ] | ||
| }, | ||
| "utils_nextflow_pipeline": { | ||
| "branch": "master", | ||
| "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa", | ||
| "installed_by": [ | ||
| "subworkflows" | ||
| ] | ||
| }, | ||
| "utils_nfcore_pipeline": { | ||
| "branch": "master", | ||
| "git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3", | ||
| "installed_by": [ | ||
| "subworkflows" | ||
| ] | ||
| }, | ||
| "utils_nfvalidation_plugin": { | ||
| "branch": "master", | ||
| "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa", | ||
| "installed_by": [ | ||
| "subworkflows" | ||
| ] | ||
| } | ||
| } | ||
| } | ||
| "name": "ecoflow/genomeqc", | ||
| "homePage": "https://github.com/ecoflow/genomeqc", | ||
| "repos": { | ||
| "https://github.com/nf-core/modules.git": { | ||
| "modules": { | ||
| "nf-core": { | ||
| "agat/spstatistics": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "busco/busco": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "fastqc": { | ||
| "branch": "master", | ||
| "git_sha": "285a50500f9e02578d90b3ce6382ea3c30216acd", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "gffread": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "merqury/merqury": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "meryl/count": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "multiqc": { | ||
| "branch": "master", | ||
| "git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "ncbigenomedownload": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "orthofinder": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "pigz/uncompress": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "quast": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["modules"] | ||
| }, | ||
| "seqkit/seq": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["fasta_explore_search_plot_tidk"] | ||
| }, | ||
| "seqkit/sort": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["fasta_explore_search_plot_tidk"] | ||
| }, | ||
| "tidk/explore": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["fasta_explore_search_plot_tidk"] | ||
| }, | ||
| "tidk/plot": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["fasta_explore_search_plot_tidk"] | ||
| }, | ||
| "tidk/search": { | ||
| "branch": "master", | ||
| "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1", | ||
| "installed_by": ["fasta_explore_search_plot_tidk"] | ||
| } | ||
| } | ||
| }, | ||
| "subworkflows": { | ||
| "nf-core": { | ||
| "fasta_explore_search_plot_tidk": { | ||
| "branch": "master", | ||
| "git_sha": "ab80a04707104a4baf39341581dfbced5da05479", | ||
| "installed_by": ["subworkflows"] | ||
| }, | ||
| "utils_nextflow_pipeline": { | ||
| "branch": "master", | ||
| "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa", | ||
| "installed_by": ["subworkflows"] | ||
| }, | ||
| "utils_nfcore_pipeline": { | ||
| "branch": "master", | ||
| "git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3", | ||
| "installed_by": ["subworkflows"] | ||
| }, | ||
| "utils_nfvalidation_plugin": { | ||
| "branch": "master", | ||
| "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa", | ||
| "installed_by": ["subworkflows"] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |