Merge pull request #21 from stelmo/mk-tests

attempt at fixing the tests

.github/workflows/ci.yml

@@ -25,7 +25,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      - uses: julia-actions/cache@v1
+      - uses: julia-actions/cache@v2
       - uses: julia-actions/julia-buildpkg@latest
       - run: |
           git config --global user.name Tester

.github/workflows/docs.yml

@@ -19,7 +19,7 @@ jobs:
       - uses: julia-actions/setup-julia@v2
         with:
           version: '1.10'
-      - uses: julia-actions/cache@v1
+      - uses: julia-actions/cache@v2
       - name: Install dependencies
         run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
       - name: Build and deploy

.gitignore

@@ -1,4 +1,3 @@
-/docs/build/
 
 # ignore vscode
 ./vscode
@@ -12,9 +11,7 @@
 /docs/build
 Manifest.toml
 
-dev/Alloascoidea_hylecoeti.json
-dev/Alloascoidea_hylecoeti_isozymes.json
-dev/Alloascoidea_hylecoeti_molar_mass.json
-
-
 *.json
+
+# vim
+.*.swp

Project.toml

@@ -1,7 +1,7 @@
 name = "DifferentiableMetabolism"
 uuid = "9677e053-0fc1-49e6-98a8-2ad3a1525e54"
 authors = ["St. Elmo Wilken <[email protected]> and contributors"]
-version = "0.2.0"
+version = "0.3.0"
 
 [deps]
 AbstractFBCModels = "5a4f3dfa-1789-40f8-8221-69268c29937c"

docs/Project.toml

@@ -7,10 +7,10 @@ ConstraintTrees = "5515826b-29c3-47a5-8849-8513ac836620"
 DifferentiableMetabolism = "9677e053-0fc1-49e6-98a8-2ad3a1525e54"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be"
 JSONFBCModels = "475c1105-d6ed-49c1-9b32-c11adca6d3e8"
 JuMP = "4076af6c-e467-56ae-b986-b466b2749572"
 Literate = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
-Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
 Tulip = "6dd1b50a-3aae-11e9-10b5-ef983d2400fa"
 
 [compat]