build based on d75f5b0

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-09-17T11:23:25","documenter_version":"1.7.0"}}
+{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-10-24T17:24:45","documenter_version":"1.7.0"}}

dev/1-parametric-models/index.html

@@ -96,4 +96,4 @@
 )
 m_noparams.fluxes
 
-pqv17 = ParameterLinearValue([1, 2], [2, 1]) * ParameterLinearValue([2], [1]) #src</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">ParameterQuadraticValue([(1, 2), (2, 2)], Symbolics.Num[2, 1])</code></pre><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« README</a><a class="docs-footer-nextpage" href="../2-differentiate-enzyme-model/">Differentiating enzyme constrained metabolic models »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Tuesday 17 September 2024 11:23">Tuesday 17 September 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+pqv17 = ParameterLinearValue([1, 2], [2, 1]) * ParameterLinearValue([2], [1]) #src</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">ParameterQuadraticValue([(1, 2), (2, 2)], Symbolics.Num[2, 1])</code></pre><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« README</a><a class="docs-footer-nextpage" href="../2-differentiate-enzyme-model/">Differentiating enzyme constrained metabolic models »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Thursday 24 October 2024 17:24">Thursday 24 October 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/3-parameter-estimation/index.html

@@ -129,10 +129,10 @@
     estimated_parameters[r4] -= η * dL_dkcats[2]
 end
 
-lines(losses; axis = (xlabel = &quot;Iterations&quot;, ylabel = &quot;L2 loss&quot;))</code></pre><img src="98c59523.png" alt="Example block output"/><pre><code class="language-julia hljs">estimated_parameters</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Dict{Symbolics.Num, Float64} with 3 entries:
-  r3                 =&gt; 2.05711
+lines(losses; axis = (xlabel = &quot;Iterations&quot;, ylabel = &quot;L2 loss&quot;))</code></pre><img src="ffa91456.png" alt="Example block output"/><pre><code class="language-julia hljs">estimated_parameters</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Dict{Symbolics.Num, Float64} with 3 entries:
+  r3                 =&gt; 6.88387
   capacitylimitation =&gt; 50.0
-  r4                 =&gt; 3.00787</code></pre><pre><code class="language-julia hljs">true_parameter_values</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Dict{Symbolics.Num, Float64} with 3 entries:
+  r4                 =&gt; 0.993201</code></pre><pre><code class="language-julia hljs">true_parameter_values</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Dict{Symbolics.Num, Float64} with 3 entries:
   r3                 =&gt; 2.0
   capacitylimitation =&gt; 50.0
-  r4                 =&gt; 3.0</code></pre><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../2-differentiate-enzyme-model/">« Differentiating enzyme constrained metabolic models</a><a class="docs-footer-nextpage" href="../reference/">Reference »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Tuesday 17 September 2024 11:23">Tuesday 17 September 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+  r4                 =&gt; 3.0</code></pre><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../2-differentiate-enzyme-model/">« Differentiating enzyme constrained metabolic models</a><a class="docs-footer-nextpage" href="../reference/">Reference »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Thursday 24 October 2024 17:24">Thursday 24 October 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>