Update add_dp_rate_4.pl

stat-lab · Oct 21, 2022 · 97379d4 · 97379d4
1 parent fe7204c
commit 97379d4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/add_dp_rate_4.pl b/scripts/add_dp_rate_4.pl
@@ -9,7 +9,6 @@
 my $cov_dir = shift @ARGV;
 my $min_split_diff = shift @ARGV;
 
-my $flank_len = 1000;
 my $flank_rate = 0.1;
 my $bin_size = 50;
 
@@ -58,6 +57,7 @@
         my $incons_cov_rate = 0;
         my $split_rate = 0;
         my $CNVnator_flag = 0;
+        my $flank_len = 1000;
         $flank_len = 100 if ($len < 150) and ($type eq 'DUP');
         my $pos2 = $pos - 1;
         $CNVnator_flag = 1 if ($pos2 % 1000 <= 1) and ($len >= 2000);