added test (#97)

* added test * format --------- Co-authored-by: Nigel@SudioMac <[email protected]>
stSoftwareAU · May 13, 2023 · 53ea13d · 53ea13d
1 parent 257d7ba
commit 53ea13d
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diff --git a/test/CRISPR.ts b/test/CRISPR.ts
@@ -131,7 +131,7 @@ Deno.test("REMOVE", () => {
   }
 });
 
-Deno.test("CRISPR-multi-outputs", () => {
+Deno.test("CRISPR-multi-outputs1", () => {
   const json: NetworkInternal = {
     nodes: [
       { type: "hidden", squash: "LOGISTIC", bias: -1, index: 3, uuid: "h1" },
@@ -208,3 +208,81 @@ Deno.test("CRISPR-multi-outputs", () => {
   Deno.writeTextFileSync("test/data/CRISPR/.actual-sane.json", actualTXT);
   assertEquals(actualTXT, expectedTXT, "should have converted");
 });
+
+Deno.test("CRISPR-multi-outputs2", () => {
+  const json: NetworkInternal = {
+    nodes: [
+      { type: "hidden", squash: "LOGISTIC", bias: -1, index: 3, uuid: "h1" },
+      // { type: "hidden", squash: "LOGISTIC", bias: -0.5, index: 4, uuid: "h2" },
+      // { type: "hidden", squash: "LOGISTIC", bias: 0, index: 5, uuid: "h3" },
+      // { type: "hidden", squash: "LOGISTIC", bias: 0.5, index: 6, uuid: "h4" },
+      // { type: "hidden", squash: "MEAN", bias: -0.25, index: 7, uuid: "h5" },
+      {
+        type: "output",
+        squash: "IDENTITY",
+        index: 4,
+        uuid: "h6",
+        bias: 0,
+      },
+      {
+        type: "output",
+        squash: "IDENTITY",
+        index: 5,
+        uuid: "h7",
+        bias: 0,
+      },
+      {
+        type: "output",
+        squash: "LOGISTIC",
+        index: 6,
+        uuid: "h8",
+        bias: 0,
+      },
+    ],
+    connections: [
+      { from: 1, to: 3, weight: 0.1 },
+      { from: 2, to: 4, weight: 0.2 },
+      { from: 3, to: 5, weight: 0.3 },
+      // { from: 3, to: 4, weight: 0.3 },
+      { from: 2, to: 6, weight: 0.4 },
+      // { from: 5, to: 10, weight: 0.4 },
+      // { from: 1, to: 6, weight: 0.5 },
+      // { from: 4, to: 7, weight: 0.7 },
+      // { from: 6, to: 8, weight: 0.8 },
+      // { from: 7, to: 9, weight: 0.9 },
+    ],
+    input: 3,
+    output: 3,
+  };
+  const network = Network.fromJSON(json);
+  Deno.writeTextFileSync(
+    "test/data/CRISPR/.network-sane2.json",
+    JSON.stringify(network.internalJSON(), null, 2),
+  );
+  network.validate();
+  const crispr = new CRISPR(network);
+  const dnaTXT = Deno.readTextFileSync("test/data/CRISPR/DNA-SANE.json");
+
+  const networkSANE = Network.fromJSON(crispr.apply(JSON.parse(dnaTXT)));
+  networkSANE.validate();
+  const expectedJSON = JSON.parse(
+    Deno.readTextFileSync("test/data/CRISPR/expected-sane2.json"),
+  );
+
+  const expectedTXT = JSON.stringify(
+    Network.fromJSON(expectedJSON).internalJSON(),
+    null,
+    2,
+  );
+
+  Deno.writeTextFileSync("test/data/CRISPR/.expected-sane2.json", expectedTXT);
+
+  const actualTXT = JSON.stringify(
+    networkSANE.internalJSON(),
+    null,
+    2,
+  );
+
+  Deno.writeTextFileSync("test/data/CRISPR/.actual-sane2.json", actualTXT);
+  assertEquals(actualTXT, expectedTXT, "should have converted");
+});
diff --git a/test/data/CRISPR/expected-sane2.json b/test/data/CRISPR/expected-sane2.json
@@ -0,0 +1,140 @@
+{
+  "nodes": [
+    {
+      "type": "hidden",
+      "index": 3,
+      "uuid": "h1",
+      "bias": -1,
+      "squash": "LOGISTIC"
+    },
+    {
+      "type": "hidden",
+      "index": 4,
+      "uuid": "h6",
+      "bias": 0,
+      "squash": "IDENTITY"
+    },
+    {
+      "type": "hidden",
+      "index": 5,
+      "uuid": "h7",
+      "bias": 0,
+      "squash": "IDENTITY"
+    },
+    {
+      "type": "hidden",
+      "index": 6,
+      "uuid": "h8",
+      "bias": 0,
+      "squash": "LOGISTIC"
+    },
+    {
+      "type": "output",
+      "index": 7,
+      "uuid": "ed56a8a6-001-4a53-9eab-583c499d231b",
+      "bias": -0.0001,
+      "squash": "MINIMUM",
+      "tags": [
+        {
+          "name": "CRISPR",
+          "value": "Sane Output"
+        }
+      ]
+    },
+    {
+      "type": "output",
+      "index": 8,
+      "uuid": "ed56a8a6-002-4a53-9eab-583c499d231b",
+      "bias": 0,
+      "squash": "MEAN",
+      "tags": [
+        {
+          "name": "CRISPR",
+          "value": "Sane Output"
+        }
+      ]
+    },
+    {
+      "type": "output",
+      "index": 9,
+      "uuid": "ed56a8a6-003-4a53-9eab-583c499d231b",
+      "bias": 0.0001,
+      "squash": "MAXIMUM",
+      "tags": [
+        {
+          "name": "CRISPR",
+          "value": "Sane Output"
+        }
+      ]
+    }
+  ],
+  "connections": [
+    {
+      "weight": 0.1,
+      "from": 1,
+      "to": 3
+    },
+    {
+      "weight": 0.2,
+      "from": 2,
+      "to": 4
+    },
+    {
+      "weight": 0.4,
+      "from": 2,
+      "to": 6
+    },
+    {
+      "weight": 0.3,
+      "from": 3,
+      "to": 5
+    },
+    {
+      "weight": 1,
+      "from": 4,
+      "to": 7
+    },
+    {
+      "weight": 1,
+      "from": 4,
+      "to": 8
+    },
+    {
+      "weight": 1,
+      "from": 4,
+      "to": 9
+    },
+    {
+      "weight": 1,
+      "from": 5,
+      "to": 7
+    },
+    {
+      "weight": 1,
+      "from": 5,
+      "to": 8
+    },
+    {
+      "weight": 1,
+      "from": 5,
+      "to": 9
+    },
+    {
+      "weight": 1,
+      "from": 6,
+      "to": 7
+    },
+    {
+      "weight": 1,
+      "from": 6,
+      "to": 8
+    },
+    {
+      "weight": 1,
+      "from": 6,
+      "to": 9
+    }
+  ],
+  "input": 3,
+  "output": 3
+}