(BITS-VIB)

RNASeq Hands on training 2015

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Code developped for the 2015 sessions.

Full information about the RNASeq hands-on training can be found on our BITS WIKI in the dedicated pages starting at Hands-on_introduction_to_NGS_RNASeq_DE_analysis

The code posted here will be maintained and might be different from that used during the training.

This repo presents two folders for

• scripts: code relative to the unix command-line manipulation of the reads (QC, mapping, post-processing, ...)
• R-scripts: the R/bioconductor analysis of the gene counts obtained from the mapping of the reads (EdgeR, Deseq2, RobiNA, ...)

Please send comments and feedback to [email protected]

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