apply ruff format and pre-commit checks

[zacharyburnett]

apply pre-commit across repository

Checklist for PR authors (skip items if you don't have permissions or they are not applicable)

• added entry in CHANGES.rst within the relevant release section
• updated or added relevant tests
• updated relevant documentation
• added relevant milestone
• added relevant label(s)
• ran regression tests, post a link to the Jenkins job below.
  How to run regression tests on a PR
• All comments are resolved
• Make sure the JIRA ticket is resolved properly

[codecov]

Codecov Report

Attention: Patch coverage is 75.73427% with 347 lines in your changes missing coverage. Please review.

Project coverage is 59.52%. Comparing base (4b77a5e) to head (02bdaca).

Files with missing lines	Patch %	Lines
jwst/cube_build/cube_build_step.py	52.67%	53 Missing ⚠️
jwst/cube_build/blot_cube_build.py	3.22%	30 Missing ⚠️
jwst/assign_wcs/niriss.py	52.83%	25 Missing ⚠️
jwst/cube_build/cube_build_io_util.py	78.78%	21 Missing ⚠️
jwst/ami/ami_average.py	0.00%	17 Missing ⚠️
jwst/cube_build/cube_build.py	78.48%	17 Missing ⚠️
jwst/combine_1d/combine1d.py	72.54%	14 Missing ⚠️
jwst/background/background_sub.py	48.00%	13 Missing ⚠️
jwst/assign_wcs/nirspec.py	94.31%	12 Missing ⚠️
jwst/assign_wcs/util.py	82.81%	11 Missing ⚠️
... and 36 more

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #8648      +/-   ##
==========================================
- Coverage   59.60%   59.52%   -0.09%     
==========================================
  Files         391      391              
  Lines       39286    39373      +87     
==========================================
+ Hits        23418    23436      +18     
- Misses      15868    15937      +69     

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[zacharyburnett]

these are way too many changes with diminishing returns for development; closing