Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Bump niffler from 2.5.0 to 2.6.0 #3204

Merged
merged 1 commit into from
Jun 11, 2024
Merged

Conversation

dependabot[bot]
Copy link
Contributor

@dependabot dependabot bot commented on behalf of github Jun 10, 2024

Bumps niffler from 2.5.0 to 2.6.0.

Changelog

Sourced from niffler's changelog.

2.6.0 - 2024-06-08

Added

Changed

  • Replace xz2 to liblzma
  • Bump MRSV to 1.65
  • Support for multistream bzip2 files by default (#62)

Fixed

  • Update bzip to 0.4.4
  • Update bgzip to 0.3
  • Update zstd 0.13
Commits

Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot merge will merge this PR after your CI passes on it
  • @dependabot squash and merge will squash and merge this PR after your CI passes on it
  • @dependabot cancel merge will cancel a previously requested merge and block automerging
  • @dependabot reopen will reopen this PR if it is closed
  • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

@dependabot dependabot bot added dependencies Pull requests that update a dependency file rust labels Jun 10, 2024
Copy link

codecov bot commented Jun 10, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 86.69%. Comparing base (3818660) to head (626c9de).
Report is 70 commits behind head on latest.

Additional details and impacted files
@@           Coverage Diff           @@
##           latest    #3204   +/-   ##
=======================================
  Coverage   86.69%   86.69%           
=======================================
  Files         136      136           
  Lines       15841    15840    -1     
  Branches     2716     2716           
=======================================
  Hits        13733    13733           
+ Misses       1798     1797    -1     
  Partials      310      310           
Flag Coverage Δ
hypothesis-py 25.35% <ø> (ø)
python 92.33% <ø> (ø)
rust 62.28% <ø> (+0.02%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@ctb ctb enabled auto-merge (squash) June 11, 2024 13:16
@ctb
Copy link
Contributor

ctb commented Jun 11, 2024

@dependabot rebase

Bumps [niffler](https://github.com/luizirber/niffler) from 2.5.0 to 2.6.0.
- [Changelog](https://github.com/luizirber/niffler/blob/master/CHANGELOG.md)
- [Commits](luizirber/niffler@v2.5.0...v2.6.0)

---
updated-dependencies:
- dependency-name: niffler
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/cargo/niffler-2.6.0 branch from b9f73f3 to 626c9de Compare June 11, 2024 15:21
@ctb ctb merged commit 86bab14 into latest Jun 11, 2024
40 checks passed
@ctb ctb deleted the dependabot/cargo/niffler-2.6.0 branch June 11, 2024 16:38
ctb added a commit that referenced this pull request Jun 19, 2024
## [0.14.1] - 2024-06-19

MSRV: 1.65

Changes/additions:

* adjust how ANI is calculated in the revindex code. (#3218)

Updates:

* Bump histogram from 0.10.2 to 0.11.0 (#3216)
* Bump histogram from 0.10.1 to 0.10.2 (#3207)
* Bump statrs from 0.16.1 to 0.17.1 (#3205)
* Bump roaring from 0.10.4 to 0.10.5 (#3206)
* Bump primal-check from 0.3.3 to 0.3.4 (#3208)
* Bump niffler from 2.5.0 to 2.6.0 (#3204)
@ctb ctb mentioned this pull request Jun 29, 2024
15 tasks
ctb added a commit that referenced this pull request Jun 29, 2024
Release candidate testing:
- [ ] Command line tests pass for a release candidate
- [ ] All eight release candidate wheels are built

Releasing to PyPI:

- [ ] RC tag(s)s deleted on github
- [ ] Release tag cut
- [ ] Release notes written
- [ ] All eight release wheels built
- [ ] Release wheels uploaded to pypi
- [ ] tar.gz distribution uploaded to pypi

After release to PyPI and conda-forge/bioconda packages built:

- [ ] [PyPI page](https://pypi.org/project/sourmash/) updated
- [ ] Zenodo DOI successfully minted upon new github release - [see
search
results](https://zenodo.org/search?page=1&size=20&q=sourmash&sort=mostrecent)
- [ ] `pip install sourmash` installs the correct version
- [ ] [conda-forge
sourmash-minimal-feedstock](https://github.com/conda-forge/sourmash-minimal-feedstock)
has updated `sourmash-minimal` to the correct version
- [ ] `mamba create -n smash-release -y sourmash` installs the correct
version

Optional but recommended:

- [ ] PR submitted to update pyodide version
- [ ] PR submitted to update spack version

---

## Release notes

Minor new features:

* check `select` parameters; enforce types when building manifests
(#3212)
* patch-fix `sig extract` to no longer create empty zips (#3214)

Bug fixes:

* adjust how ANI is calculated in the revindex code. (#3218)

Cleanup and documentation updates:

* final updates for 2024 JOSS publication (#3225)
* Improve JOSS paper affiliations (#3224)
* fix DOI for Rahman Hera paper in JOSS pub. (#3221)
* upd citations, minor text (#3220)

Developer updates:

* bump sourmash core version to 0.14.1 (#3219)
* bump version to 4.8.10-dev (#3211)

Dependabot updates:

- Bump proptest from 1.4.0 to 1.5.0 (#3222)
- [pre-commit.ci] pre-commit autoupdate (#3223)
- [pre-commit.ci] pre-commit autoupdate (#3003)
- Bump histogram from 0.10.2 to 0.11.0 (#3216)
- Bump pypa/cibuildwheel from 2.19.0 to 2.19.1 (#3217)
- Bump histogram from 0.10.1 to 0.10.2 (#3207)
- Bump statrs from 0.16.1 to 0.17.1 (#3205)
- Bump roaring from 0.10.4 to 0.10.5 (#3206)
- Bump primal-check from 0.3.3 to 0.3.4 (#3208)
- Bump niffler from 2.5.0 to 2.6.0 (#3204)
- Bump pypa/cibuildwheel from 2.18.1 to 2.19.0 (#3202)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
dependencies Pull requests that update a dependency file rust
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant