Contains the code and installation files for the Galaxy pipeline developed as part of SYBIL
What are all the directories for?
- install: scripts used to install the R scripts and the needed libraries into the Galaxy server
- man: Manual pages for the R scripts. One file per R script with name that matches the R script but with no extension
- src: Source code, R files in sub directories. XML generated by RGalaxy
- alt-src: Source code, R files in sub directories and corresponding xml files
- test: Test scripts for R scripts (with R extension)
- scripts: R and Python code to run the microarray and RNA-seq analysis and post-process the data for analysis
- workflows: Galaxy workflows for the pipeline