Added taxonomy report parameter in StructureSearchJob branch (#95)

* add taxonomy report parameter in StructureSearchJob branch * make a separate if branch for taxonomy report option
soedinglab · Dec 2, 2024 · 9390348 · 9390348
1 parent f9bc266
commit 9390348
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/backend/worker.go b/backend/worker.go
@@ -390,6 +390,11 @@ mv -f -- "${BASE}/query.lookup_tmp" "${BASE}/query.lookup"
 					parameters = append(parameters, "--greedy-best-hits")
 				}
 
+				if params.Taxonomy {
+					parameters = append(parameters, "--report-mode")
+					parameters = append(parameters, "0")
+				}
+
 				if params.Taxonomy && job.TaxFilter != "" {
 					parameters = append(parameters, "--taxon-list")
 					parameters = append(parameters, job.TaxFilter)