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Pull requests: snakemake/snakemake-wrappers

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Pull requests list

feat: bowtie2 can now sort with samtools and picard
#3518 opened Dec 3, 2024 by jlanga Loading…
7 tasks done
7
chore: release 5.4.0 autorelease: pending
#3505 opened Nov 28, 2024 by github-actions bot Loading…
1
feat: Varscan2 - SnpEff Meta wrapper
#3501 opened Nov 26, 2024 by tdayris Loading…
7 tasks done
15
feat: NGSCheckMate
#3498 opened Nov 25, 2024 by tdayris Loading…
7 tasks done
30
fix: get ensembl-reference wrapper to download more than one chromosome
#3432 opened Nov 6, 2024 by dlaehnemann Loading…
7 tasks done
15
perf: autobump bio/nanosim/simulator bio/nanosim/simulator
#3414 opened Nov 1, 2024 by snakedeploy-bot bot Loading…
1
perf: autobump bio/rubic bio/rubic
#3364 opened Oct 25, 2024 by snakedeploy-bot bot Loading…
1
perf: autobump bio/reference/ensembl-biomart-table bio/reference/ensembl-biomart-table
#3348 opened Oct 23, 2024 by snakedeploy-bot bot Loading…
1
feat: added wrapper for Paraphase
#3071 opened Jul 15, 2024 by MagdalenaZZ Loading…
1 task done
@fgvieira
74
feat: Add a wrapper for quarto markdown rendering
#3003 opened Jun 20, 2024 by votti Loading…
1 task done
26
perf: autobump bio/sortmerna bio/sortmerna
#2985 opened Jun 7, 2024 by snakedeploy-bot bot Loading…
5
feat: ensembl reference collections
#2977 opened Jun 3, 2024 by mauripops Loading…
1 task done
8
feat: add aria2c wrapper
#2725 opened Mar 7, 2024 by fgvieira Loading…
1 task done
14
feat: Add configurable protocol support to ensembl reference download
#2649 opened Feb 15, 2024 by pettyalex Loading…
1 task done
10
feat: add Orthanq wrappers for hla and virus applications
#2640 opened Feb 4, 2024 by huzuner Loading…
1 task
11
perf: autobump bio/gdc-client/download bio/gdc-client/download
#2031 opened Oct 31, 2023 by snakedeploy-bot bot Loading…
7
feat: add wrapper for metaDMG Stale
#1809 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: add ngsngs wrapper Stale
#1808 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: new inphared-db wrapper Stale
#1550 opened Jul 20, 2023 by nacnoriko Loading…
1 task
12
feat: add wrapper for rbt vcf_fix_iupac_alleles
#1209 opened Apr 5, 2023 by fgvieira Loading…
1 task done
6
fix: Allow concurrent and large refgenie downloads Stale
#1172 opened Mar 28, 2023 by Austin-s-h Loading…
1 task done
8
perf: autobump bio/trimmomatic/se bio/trimmomatic/se
#869 opened Nov 11, 2022 by snakedeploy-bot bot Loading…
1
perf: autobump bio/trimmomatic/pe bio/trimmomatic/pe
#778 opened Nov 4, 2022 by snakedeploy-bot bot Loading…
1
perf: autobump bio/dragmap/align bio/dragmap/align
#775 opened Nov 4, 2022 by snakedeploy-bot bot Loading…
3
Update wrapper documentation Stale
#392 opened Jul 22, 2021 by tdayris Loading…
10 of 12 tasks
6
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