src/StreamReader.cpp: for the BamReader class, adding a reset to the …

…bitvector that indicates for each adapter if it has been found already within the current read. This reset existed in the corresponding functions for other file formats, but was forgotten for the BAM format

src/StreamReader.cpp

@@ -927,6 +927,7 @@ BamReader::read_sequence_line(FastqStats &stats) {
   still_in_buffer = true;
   next_truncation = 100;
   do_kmer_read = (stats.num_reads == next_kmer_read);
+  adapters_found.reset();
 
   const size_t seq_len = b->core.l_qseq;
   // MN: TODO: make sure everything works in this scope