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v2 cutover (#36)
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* v2 cutover

* SqlFluff pass

* Uprev unit test python, sqlfluff pass

* yaml int vs string quoting
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dogversioning authored Apr 4, 2024
1 parent 368507d commit bdee70f
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Showing 13 changed files with 955 additions and 303 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.9
python-version: "3.10"

lint:
runs-on: ubuntu-22.04
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4 changes: 2 additions & 2 deletions cumulus_library_covid/covid_symptom/counts.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
from pathlib import Path
from cumulus_library.schema.counts import CountsBuilder
from cumulus_library.statistics.counts import CountsBuilder


class CovidCountsBuilder(CountsBuilder):
Expand Down Expand Up @@ -98,7 +98,7 @@ def count_symptom(self, duration="week"):
]
return self.count_encounter(view_name, from_table, cols)

def prepare_queries(self, cursor=None, schema=None):
def prepare_queries(self, cursor=None, schema=None, **kwargs):
self.queries = [
self.count_dx("month"),
self.count_dx("week"),
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