Metabox

This package is for West Coast Metabolomics Center 2017 Summer Course Statistics Part.

cite: Wanichthanarak K, Fan S, Grapov D, Barupal DK, Fiehn O. Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration. PloS one. 2017 Jan 31;12(1):e0171046.

This package is built as a wrapper of metabox code.

Online version (recommended):

http://wcmc-da.fiehnlab.ucdavis.edu

To Install Locally:

Software requirement: R 3.3.3 (and RTools for Windows Users). R Studio is highly recommended. Run following code in R (or R Studio).

shell("zip") # Some packages ask for zip. If error returns, visit https://cran.r-project.org/web/packages/openxlsx/vignettes/Introduction.pdf.
#Install dependency packages.
install.packages('devtools', repos="http://cran.rstudio.com/")
library(devtools)
install.packages('opencpu')
library(opencpu)
install.packages("pacman")
install.packages("data.table")

#Install WCMC_DA
install.packages("https://github.com/slfan2013/WCMC_DA/raw/master/WCMC.MasterController_0.1.0.tar.gz",repos=NULL)
WCMC.MasterController::update_master()
WCMC.Course2017.STAT::update_childs()

To Launch Locally:

library(opencpu);
opencpu$browse("library/WCMC.Course2017.STAT/www");

Tutorial:

https://github.com/slfan2013/WCMC_DA/wiki

To update to the newest version:

WCMC.MasterController::update_master()
WCMC.Course2017.STAT::update_childs()

To Report Bugs or Provide Suggestions:

Please go to https://github.com/slfan2013/WCMC_DA/issues OR contact the maintainer through email, slfan at ucdavis dot edu, and thanks for your contribution.

please note that, if you use the metabox locally, the first time running will be slow depending on the internet because it needs to download all the dependency packages.