Code

[python] NDArray read path#1817

Code

Closed

nguyenv wants to merge 62 commits intomainsingle-cell-data/TileDB-SOMA:mainfrom viviannguyen/ndarray-read-pathsingle-cell-data/TileDB-SOMA:viviannguyen/ndarray-read-pathCopy head branch name to clipboard

+2,898-2,272

Commits

Commits on Dec 5, 2023

• Addition Of DataFrameWrapper

  Show description for 3a1f669
  nguyenv

  committed
  3a1f669

• Add Methods to DataFrameWrapper and ArrayWrapper

  Show description for 45d294b
  nguyenv

  committed
  45d294b

• Free Name in ArrowSchema

  nguyenv

  committed
  c6ef885

• Add Dictionary Support For ArraySchema -> ArrowSchema

  nguyenv

  committed
  7923bbd

• Refactor QueryCondition

  Show description for 6747e38
  nguyenv

  committed
  6747e38

• Formatting

  nguyenv

  committed
  c85fe9b

• SOMADataFrame --> DataframeWrapper

  nguyenv

  committed
  d4c185e

• Add Pybind11 Common Code

  nguyenv

  committed
  dd7b65b

• Reduce Usage of TileDB ArraySchema in Favor in Pyarrow Schema

  nguyenv

  committed
  31db924

• Support All Enumeration Value Types in to_arrow

  nguyenv

  committed
  4b3ad74

• Do TileDB ArraySchema to ArrowSchema Converstion in C++

  Show description for a244b4d
  nguyenv

  committed
  a244b4d

• Correct exists Method For macos

  nguyenv

  committed
  4236ec5

• "Correct" typing

  nguyenv

  committed
  bfa4384

• Add domain for SOMADataFrame

  nguyenv

  committed
  4ca0e9f

• TileDB ArraySchema to ArrowSchema Should Not Hardcode String Dict

  nguyenv

  committed
  4093f7e

• Remove extra line in setup.py

  nguyenv

  committed
  db1d2d7

• Post-rebase corrections

  nguyenv

  committed
  da1143c

• Re-add SOMAArray::schema -> TileDB ArraySchema

  Show description for ee6f654
  nguyenv

  committed
  ee6f654

• Remove #include <tiledb/tiledb> from Array derived SOMAObjects

  nguyenv

  committed
  901d013

• Clean NED

  nguyenv

  committed
  c66f34a

• Feedback

  nguyenv

  committed
  59ab991

• Corrections post-rebase with main

  nguyenv

  committed
  de92539

• Use DTypeLike instead of np.dtype[Any]

  nguyenv

  committed
  5b83ad9

• Create Factory in Pybind11, Bind SOMAError

  nguyenv

  committed
  b377353

• Add missing soma_object.cc files

  nguyenv

  committed
  25fa20a

• Use explcit size for string metadata

  nguyenv

  committed
  c919fcd

• Correct exception handling on macOS

  nguyenv

  committed
  e4e8a72

• Replace with TPY_ERROR_LOC where necessary

  nguyenv

  committed
  56e043b

• More modularizing

  nguyenv

  committed
  cbdd361

• Correct macos exception handling

  nguyenv

  committed
  8a14b65

• Update according to review

  nguyenv

  committed
  62b143a

• Correct linting errors

  nguyenv

  committed
  ef37d68

• Corrections post-rebase with main

  nguyenv

  committed
  f940625

• Addition Of DataFrameWrapper

  Show description for 0b4741c
  nguyenv

  committed
  0b4741c

• Add Methods to DataFrameWrapper and ArrayWrapper

  Show description for 45bbcd4
  nguyenv

  committed
  45bbcd4

• Free Name in ArrowSchema

  nguyenv

  committed
  053299f

• Add Dictionary Support For ArraySchema -> ArrowSchema

  nguyenv

  committed
  8904a41

• Refactor QueryCondition

  Show description for a58c516
  nguyenv

  committed
  a58c516

• Formatting

  nguyenv

  committed
  a09e39a

• Do TileDB ArraySchema to ArrowSchema Converstion in C++

  Show description for 44a9bd5
  nguyenv

  committed
  44a9bd5

• Add domain for SOMADataFrame

  nguyenv

  committed
  7cfc400

• Post-rebase corrections

  nguyenv

  committed
  1f4173e

• [python/c++] SparseNDArray read path

  nguyenv

  committed
  637b6bd

• [python/c++] DenseNDArray read path

  nguyenv

  committed
  80ef957

• Remove soma_array.cc

  nguyenv

  committed
  cd00fa0

• WIP

  nguyenv

  committed
  b2e58f4

• Fix Enumeration Getter

  nguyenv

  committed
  62383a9

• Fix major bug where dense array was actually opening as sparse array

  nguyenv

  committed
  79024f2

• WIP post-rebase fixes

  nguyenv

  committed
  4a5310c

• WIP

  nguyenv

  committed
  607172c

• WIP

  nguyenv

  committed
  a5b3d12

• WIP

  nguyenv

  committed
  3f6d023

• WIP

  nguyenv

  committed
  8254985

• WIP no segfault

  nguyenv

  committed
  66c1ed1

• WIP

  nguyenv

  committed
  a5ecd42

• WIP

  nguyenv

  committed
  cdfe2bf

• WIP

  nguyenv

  committed
  12605bb

• Use future to wait for query

  nguyenv

  committed
  14f189d

• Separate submit_read and results

  nguyenv

  committed
  f5645a8

• Fix segfault

  nguyenv

  committed
  b3902f3

• Correct typing

  nguyenv

  committed
  9268d35

• Modify fs path string

  nguyenv

  committed
  9c1aa9c