Uniformization examples #161
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bkmartinjr
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bkmartinjr
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apis/python/examples/normalizing.md
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| ## Normalizing a SOMA collection | ||
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| The [cartographer script](../examples/cartographer.py) shows an example of how to take a collection | ||
| of H5AD files -- and/or already-ingested SOMAs -- and _normalize_ them into a uniform collection. |
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"... and aggregate them into a uniform collection." (again, not overusing the world normalize)
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@bkmartinjr thanks! i want to be clear we're not doing any concat operation though ... if someone has 27 .h5ad files they'll have a SOCO with 27 SOMAs in it ... how best clearly to indicate that fact?
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I chose the word "aggregate" rather than "concat", but am open to others.
To my eye, "aggregate" does not imply a concat operation, but I take your point that we could be more specific.
Perhaps "... shows an example of how to take multiple H5AD files and add them to a single SOMA Collection."
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Split out from #157
uniform-collection.md shows an optional way to ingest data, with opinionated uniformization. This example is intended as a template for how a given organization can automate their data-uniformization procedure.