Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

TileDB-API support needs #302

Closed
johnkerl opened this issue Sep 19, 2022 · 2 comments
Closed

TileDB-API support needs #302

johnkerl opened this issue Sep 19, 2022 · 2 comments
Labels

Comments

@johnkerl
Copy link
Member

johnkerl commented Sep 19, 2022

From @bkmartinjr -- TBD whether we continue to track this as a GitHub issue -- for now this is a starting place.

Tactical (near-term, important for launch of CELLxGENE atlas):

Mid-term (important to make atlas usable at scale):

[ ] Dictionary encoding -- will reduce size/cost of many obs/var columns which have small cardinality categories

  • Including discussion of how/when to use this, and under what circumstances its use is and/or will be most beneficial

Strategic (mid-to-long term):

[ ] Partitioning support for distributed compute
[ ] Native/C++ support for Arrow Tensor I/O (eg, CSR) #382

Bugs:
[x] SIGFPE in a particular query using default python buffer size: SC 21775

  • Fixed in core 2.13
@johnkerl johnkerl changed the title Core dependencies TileDB-API support needs Sep 19, 2022
@johnkerl johnkerl mentioned this issue Sep 19, 2022
61 tasks
@johnkerl
Copy link
Member Author

johnkerl commented Sep 19, 2022

cc @bkmartinjr @ihnorton @Shelnutt2 -- while we do (and should) track issues internally using Shortcut, we must also connect the dots for external stakeholders. That's what this issue is for.

@johnkerl
Copy link
Member Author

johnkerl commented Feb 3, 2023

See #866 and #867. Remainings are addressed already, with exception of query-partitioning support which will flow outward from TileDB core releases.

@johnkerl johnkerl closed this as completed Feb 3, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant