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cc @bkmartinjr@ihnorton@Shelnutt2 -- while we do (and should) track issues internally using Shortcut, we must also connect the dots for external stakeholders. That's what this issue is for.
From @bkmartinjr -- TBD whether we continue to track this as a GitHub issue -- for now this is a starting place.
Tactical (near-term, important for launch of CELLxGENE atlas):
[ ] Unicode dims
[x] Unicode attrs with the ability to apply
QueryCondition
(value filter) on them[x] Fix core crash which will enable SOMADataFrame (dense) implementation
.shape
attribute of arrays created withfrom_h5ad
generates error #10tiledb.open('my-sparse-array').shape
returns domain information, not nnz which is the hopeMid-term (important to make atlas usable at scale):
[ ] Dictionary encoding -- will reduce size/cost of many obs/var columns which have small cardinality categories
Strategic (mid-to-long term):
[ ] Partitioning support for distributed compute
[ ] Native/C++ support for Arrow Tensor I/O (eg, CSR) #382
Bugs:
[x] SIGFPE in a particular query using default python buffer size: SC 21775
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