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[r] Port obsm/varm for ExperimentAxisQuery from Python to R #1997

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johnkerl opened this issue Jan 5, 2024 · 0 comments · Fixed by #2351
Closed

[r] Port obsm/varm for ExperimentAxisQuery from Python to R #1997

johnkerl opened this issue Jan 5, 2024 · 0 comments · Fixed by #2351
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johnkerl commented Jan 5, 2024

Port #1930
mojaveazure added a commit that referenced this issue Mar 29, 2024
@mojaveazure
[r] Add obsm, varm, obsp, and varp to SOMAExperimentAxisQuery
7584faa 
Add support for querying `*m` and `*p` layers from
`SOMAExperimentAxisQuery`; note, just like `$X()`, these methods only
support layers stored as `SOMASparseNDArrays`

Implemented SOMA methods:
 - `SOMAExperimentAxisQuery$obsm()`: read an `obsm` layer for only the
   coordinates in the query
 - `SOMAExperimentAxisQuery$varm()`: read a `varm` layer for only the
   coordinates in the query
 - `SOMAExperimentAxisQuery$obsp()`: read an `obsp` layer for only the
   coordinates in the query
 - `SOMAExperimentAxisQuery$varp()`: read a `varp` layer for only the
   coordinates in the query

resolves #1997
@mojaveazure mojaveazure mentioned this issue Mar 29, 2024
Merged
mojaveazure added a commit that referenced this issue Mar 29, 2024
@mojaveazure
[r] Add obsm, varm, obsp, and varp to SOMAExperimentAxisQuery
f881909 
Add support for querying `*m` and `*p` layers from
`SOMAExperimentAxisQuery`; note, just like `$X()`, these methods only
support layers stored as `SOMASparseNDArrays`

Implemented SOMA methods:
 - `SOMAExperimentAxisQuery$obsm()`: read an `obsm` layer for only the
   coordinates in the query
 - `SOMAExperimentAxisQuery$varm()`: read a `varm` layer for only the
   coordinates in the query
 - `SOMAExperimentAxisQuery$obsp()`: read an `obsp` layer for only the
   coordinates in the query
 - `SOMAExperimentAxisQuery$varp()`: read a `varp` layer for only the
   coordinates in the query

resolves #1997
mojaveazure added a commit that referenced this issue Mar 29, 2024
@mojaveazure
[r] Add obsm, varm, obsp, and varp to `SOMAExperimentAxisQuer…
6abaf66 
…y` (#2351)

* [r] Add `obsm`, `varm`, `obsp`, and `varp` to `SOMAExperimentAxisQuery`
Add support for querying `*m` and `*p` layers from
`SOMAExperimentAxisQuery`; note, just like `$X()`, these methods only
support layers stored as `SOMASparseNDArrays`

Implemented SOMA methods:
 - `SOMAExperimentAxisQuery$obsm()`: read an `obsm` layer for only the
   coordinates in the query
 - `SOMAExperimentAxisQuery$varm()`: read a `varm` layer for only the
   coordinates in the query
 - `SOMAExperimentAxisQuery$obsp()`: read an `obsp` layer for only the
   coordinates in the query
 - `SOMAExperimentAxisQuery$varp()`: read a `varp` layer for only the
   coordinates in the query

resolves #1997

* Update changelog
Bump develop version
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[r] Add obsm, varm, obsp, and varp to SOMAExperimentAxisQuery single-cell-data/TileDB-SOMA
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