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[r/ci] Red R CI since Saturday 2023-11-04 #1875

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johnkerl opened this issue Nov 6, 2023 · 0 comments · Fixed by #1876
Closed

[r/ci] Red R CI since Saturday 2023-11-04 #1875

johnkerl opened this issue Nov 6, 2023 · 0 comments · Fixed by #1876
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johnkerl commented Nov 6, 2023

As discussed in Slack
This was referenced Nov 6, 2023
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mojaveazure added a commit that referenced this issue Nov 6, 2023
@mojaveazure
[r] Suppress deprecation warnings in write_soma.DataFrame()
974726f 
Bioc 3.18 and R 4.3.2 now throw deprecation warnings when casting from
`S4Vectors::DataFrame` to `data.frame`; this PR suppresses deprecation
warnings when doing that cast, but allows additional warnings to
percolate through

replaces #1874
resolves #1875
@mojaveazure mojaveazure mentioned this issue Nov 6, 2023
Merged
mojaveazure added a commit that referenced this issue Nov 6, 2023
@mojaveazure
[r] Suppress deprecation warnings in write_soma.DataFrame() (#1876)
374701f 
Bioc 3.18 and R 4.3.2 now throw deprecation warnings when casting from
`S4Vectors::DataFrame` to `data.frame`; this PR suppresses deprecation
warnings when doing that cast, but allows additional warnings to
percolate through

[sc-36559]

replaces #1874
resolves #1875
github-actions bot pushed a commit that referenced this issue Nov 6, 2023
@mojaveazure @github-actions
[r] Suppress deprecation warnings in write_soma.DataFrame() (#1876)
c7d32c3 
Bioc 3.18 and R 4.3.2 now throw deprecation warnings when casting from
`S4Vectors::DataFrame` to `data.frame`; this PR suppresses deprecation
warnings when doing that cast, but allows additional warnings to
percolate through

[sc-36559]

replaces #1874
resolves #1875
johnkerl pushed a commit that referenced this issue Nov 6, 2023
@github-actions @mojaveazure
[r] Suppress deprecation warnings in write_soma.DataFrame() (#1876) (…
3f521e9 
…#1878)

Bioc 3.18 and R 4.3.2 now throw deprecation warnings when casting from
`S4Vectors::DataFrame` to `data.frame`; this PR suppresses deprecation
warnings when doing that cast, but allows additional warnings to
percolate through

[sc-36559]

replaces #1874
resolves #1875

Co-authored-by: Paul Hoffman <[email protected]>
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[r] Suppress deprecation warnings in write_soma.DataFrame() single-cell-data/TileDB-SOMA
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